BAC Information

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BAC

Clone NameMSMg01-440I10
Chromosome4 (Build37)
Map Location 96,680,104 - 96,680,524
singlet/doubletsinglet
Overlap genenone
Upstream geneHook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440I10.T7 (MSMg01no440_i10.b1)MSMg01-440I10.TJ (MSMg01no440_i10.g1)
ACCAG530622AG530623
length758747
length of high quality
(start - end)
471 (82 - 552)433 (80 - 512)
definitionCHROMAT_FILE: MSMg01no440_i10.b1 PHD_FILE: MSMg01no440_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:00 2005CHROMAT_FILE: MSMg01no440_i10.g1 PHD_FILE: MSMg01no440_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAA
GGCGCGGAATTCATGAAATTCACACAAAAAATGGATGCATCTGGAGGATA
TCATCCTGAGTGAGGTAACCCAATCACAAAAGAACACACATGATATGTAC
TCACTGATAAGCAGATATTAGCCCAGAAACTTAGAATATACAATATACAA
TTTGCAAAACACATGAAACTCAAGAAGGAAGACTAAAGTGTGGATACTTC
ACTCCTTCTTAGAATGGGGAACAAAATACCCATGGAAGGAATAACAGAGA
CAAAGTTCTGACCTGAGACAGAAGGAATTTTCATCTAGAGACTGCCTCAT
CTGGGGATCCATCCCATATATAACAACCAAACCCAGACACTATTCCATAT
GCCAGAAAGATTTTGCTTACAGGACCTTGACATAGCTCTCTCTTGTGAGT
CTATGCCAATGCCTGTCAAATACAGAGGTGGATGCTCCTAATCATCTATT
GGATGGAACACAGGGCCCCTATTGAAGGAGCTAGAGAAAATACCCAGGAG
CTAAAGGAGTCTACAACCCTATAGGTGGAACAACGGTATGAACTAACCAG
TACCCCCCAGAGCTGTGTCTCTAGTTGCATATGTAGCAGAAGAAAGCCTA
GTTGGCCTCCCTTGATATGATAGGCCCCCGGGTATTGGCAAAATCCAATG
CTTCCCCAAAAGGGCAATGCCCCTGCCTAGGAATTGGGCAACTGTTCGGC
ATTGTATT
NTGCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGTGATGAGCCTGTGACCTC
AAATCGTGGCTTAGAATTATAGCCCCTTGGCTAAATGGAAAATAATTTAT
TAATTATTGACTGTCCTGGAGACAAGACAGAACTGCTATTCAGTAACTCA
GCTCTTGGGTAATGTGTACAAAACAAAATGAGATTTATTCAATAAGGACA
AAGGTTCTCTTTTTGCTATTCTTTGACAAAGTCCACTCAATAAGAGTAAC
TATATAAATTAAAATTTATAATAAAAACTTTATCCTCACTCCTTTATGTA
GTTTTAAATATCAGAAGCAGTGGCTGTTGTGTTGGATGTCAAATCTGGAA
GTCCTTTCCTAGATTGTATTTTTTTCTAATTTTTATTACATTTTGTTTGC
TTGTTTGTTTATTCATTTATTCCCGTGCAGGCTTATTCATGTGCAGGGAC
AACTAACACGGGACAAATGTGGAGGGCAGATGATGGTTTTCAAGAGTGGA
CTCTCTCACTCCAGCGGGCCTTAGGAATCAAAATAATGCCATGAAGCTAG
GTGACCAATAACTTTACCTACTCAACCTTCTTGCCCAATTAAAATGACAC
TTTAAAGCAGCCATCAATAATTTTGATCTATTCAAAGTAACCCTGAATTC
ATCTGCTTTAAAACTTCGGCTTTGGAACTCTAGGGATCTCATTGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_i10.g1 MSMg01no440_i10.g1 CHROMAT_FILE:
MSMg01no440_i10.g1 PHD_FILE: MSMg01no440_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:00 2005
         (433 letters)



>mm_chr4_96680104_96680936
          Length = 833

 Score =  752 bits (389), Expect = 0.0
 Identities = 413/421 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtgatgagcctgtgacctcaaatcgtggcttagaattatagccccttggctaaatgga 60
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 421 tagtgatgagcctgtgacctcaaatcgtggcttagaattatagcccctaggctaaatgaa 362

                                                                       
Query: 61  aaataatttattaattattgactgtcctggagacaagacagaactgctattcagtaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaataatttattaattattgactgtcctggagacaagacagaactgctattcagtaactc 302

                                                                       
Query: 121 agctcttgggtaatgtgtacaaaacaaaatgagatttattcaataaggacaaaggttctc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 agctcttgggtaatgtgtacaaaacaaaatgagatttattcaataaggacaaagattctc 242

                                                                       
Query: 181 tttttgctattctttgacaaagtccactcaataagagtaactatataaattaaaatttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttttgctattctttgacaaagtccactcaataagagtaactatataaattaaaatttat 182

                                                                       
Query: 241 aataaaaactttatcctcactcctttatgtagttttaaatatcagaagcagtggctgttg 300
           ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 181 aataaaaacttaatcctcactcctttgtgtagttttaaatatcagaagcagtggctgttg 122

                                                                       
Query: 301 tgttggatgtcaaatctggaagtcctttcctagattgtatttttttctaatttttattac 360
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 121 tgttggatgtcaaatctggaagtcctttcctagattacatttttttctaatttttattac 62

                                                                       
Query: 361 attttgtttgcttgtttgtttattcatttattcccgtgcaggcttattcatgtgcaggga 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 61  attttgtttgcttgtttgtttattcatttattcctgtgcaggcttattcatgtgcaggga 2

            
Query: 421 c 421
           |
Sbjct: 1   c 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)