BAC Information

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BAC

Clone NameMSMg01-440M07
Chromosome4 (Build37)
Map Location 19,236,565 - 19,236,956
singlet/doubletsinglet
Overlap geneCngb3
Upstream geneLOC667251, LOC435772, LOC623122
Downstream geneCpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800, E130310K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440M07.T7 (MSMg01no440_m07.b1)MSMg01-440M07.TJ (MSMg01no440_m07.g1)
ACCAG530806AG530807
length760770
length of high quality
(start - end)
524 (52 - 575)392 (82 - 473)
definitionCHROMAT_FILE: MSMg01no440_m07.b1 PHD_FILE: MSMg01no440_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:20 2005CHROMAT_FILE: MSMg01no440_m07.g1 PHD_FILE: MSMg01no440_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAGGCTCATACCTAAACATAATAAAAGCCATCTACAGCA
AACCAGTAGCCAACATTAAACTAAACGGAGAGAATTGCACTAAAATCAGG
GACTAGATAAGGCTGCCCACTTTCTCCCTACCTATTCAATATAGTACTTG
AAGTTCTAGCTAGAGCAAATTCCACCAGAGAACTCTTAAAACTTGATAAA
CAGCTTAAGTGCAGTAGCTAGATATAAAATTATCTCAAATAAATCAATGG
CCTTTCTCTACCCAAATATAAACGGACTGAGAAAGAAATTAGGGAAACAA
CACCATTCACAATAGTCACAAATAATATAAAATACCTTGGTGTGACTCTA
ACTAAGGAAGTAAAAGATCTGTATGATAAGAACTTCAAGTCTCTGAAGAA
AGAAATTGAAGAAGATCTCACAGGATGGAAAGATCTCCCATGCTCATGGA
TTGGCAGGATTAATATAGTAAAAATGGCTATCCTGCCGAAAGCAATCTAC
AGATTCAATGCAATCCCCATCAAAATCCCAACTCAATTCTTCATTGAGAT
AGAAAGGACAATTTGCAAATTCTTCTGGAAAAATTAAAACCTAGGATAGG
AAAAACTATTCTCCACTATAAAATAATTTTTGGGGAAACCACCAGGCCTG
ACTTTAAGTTGGACTAAATATGCATTGGTGTTAATAAAAATTGGCGGAAA
TCGGTGAAAG
NNNAACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGGAAGAATTTTCTGG
AAGAGAATCAGCACCTCTGTAGATTATGTTTCCAAATAAAACTGTGTCAG
GGGTAGTTTGGATTCTTCTATTTAGTTCTATTTCTTTGCCCTAGACAACA
GCACTGGGGAAAACTCTCTCAGAGATTTCACCCCAAATACTGACCCTGAA
TGTCGAGCAGAACTCACCAGAACAATGGCAGAGATGGAGAAAACTAGGAC
TGGGAAAGAAAAGCCAGTCAGGTAAGAATATGATGCACATGGCACAGGTT
GGAGACTTCATACACAGTTCTGGAGTGGTGTGATAAATTTCTACTTCCCT
CCTGAGTTTAAGCAAGCAATCCACAGCAGAATCTTAGCCAGGGAACTGGA
CCAGAAAAGGAAAATTCGCTTCGTCCAGCAGTTCATCATGCATTATTGAC
CAGCCATGACTACTAACCAATGTCCAGGCAGTCACTGACTGAATGACAAA
TCCCACTCATGGAAACAATTTGCATACTTACTAGACTTGGGTTAAAATAA
AACAATTTTCTAAGTACATAGTAGAATTCATTATTTCCTTTCCATTTAAC
ATTGGTAATATTTCCCGACAAAAAATTATTGATTTTCTTTTGGTCTATAA
TAATGACAATTATTGGTTTTCTCCTAGCTACTTAGAATTCTTTTTNTCCT
CTTCCATCTCTCTTTGGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_m07.g1 MSMg01no440_m07.g1 CHROMAT_FILE:
MSMg01no440_m07.g1 PHD_FILE: MSMg01no440_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:20 2005
         (392 letters)



>mm_chr4_19236365_19237156
          Length = 792

 Score =  727 bits (376), Expect = 0.0
 Identities = 388/392 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgggaagaattttctggaagagaatcagcacctctgtagattatgtttccaaataaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgggaagaattttctggaagagaatcagcacctctgtagattatgtttccaaataaaa 260

                                                                       
Query: 61  ctgtgtcaggggtagtttggattcttctatttagttctatttctttgccctagacaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgtcaggggtagtttggattcttctatttagttctatttctttgccctagacaacag 320

                                                                       
Query: 121 cactggggaaaactctctcagagatttcaccccaaatactgaccctgaatgtcgagcaga 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 cactggggaaaactctctcagagatttcaccccaaatcctgaccctgaatgtcgagcaga 380

                                                                       
Query: 181 actcaccagaacaatggcagagatggagaaaactaggactgggaaagaaaagccagtcag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 actcaccagaacaatggcagagatggagaaaactaggactgggaaagaaaggccagtcag 440

                                                                       
Query: 241 gtaagaatatgatgcacatggcacaggttggagacttcatacacagttctggagtggtgt 300
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaagaatatgaagcgcatggcacaggttggagacttcatacacagttctggagtggtgt 500

                                                                       
Query: 301 gataaatttctacttccctcctgagtttaagcaagcaatccacagcagaatcttagccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gataaatttctacttccctcctgagtttaagcaagcaatccacagcagaatcttagccag 560

                                           
Query: 361 ggaactggaccagaaaaggaaaattcgcttcg 392
           ||||||||||||||||||||||||||||||||
Sbjct: 561 ggaactggaccagaaaaggaaaattcgcttcg 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)