NNNNNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAGGATGTTTTGGGTTAGGAGCTTTTTTTTTTTTCATTT
TGCACTTTCTTTGACTGTTGTGCCAATGTTTTATATTGTATCTTCTGTAG
TTGATATCCTCTCTTCTATCTCTTGTATTCTGTTAATGATGCTTGCAACC
AATATAGTTGGTGATCTATAACTCTTAACCTCTTTCCTAGGTTTTCTATC
TCCAACATTGTCTCCCTTTGTGATTCCTTTATTGTTTCTACTTCCATTTT
TAGATTCTGGGTGGCTTTGTTCAATTCCTTCACCTGTTTTGTTGTGTTTT
CCTGTAATTCTTTAAGGGATTTTTGTGTTTCCTCATTAAGGCCTTCTACC
TGTTTTCCTGTGTTCTCCCATATTTCTTTAAGGGAGTTATTTACATCCTT
CTTAAAGTCCTCTATCAGCATTATGAGATGTTATTTTAAATCCAAGTCTT
TCTTTTTCAGTGTGTTAGGTTATACAAGACTTGCTGCTGTGGAAGAACTG
GGTTCTGATGATGCATGTAACCTTGCTTTCTTGTTGTAAAGTTCTTGCCT
CTCTTTTAAAATCTGAATAACTCTGGGGTAATAGGCCTTGCTGGCCAACC
CTGAACTTGTCCCTCCTCTTGCCTTTAAACTGTGGCACACCCCGGGAGAA
AAATTCCTCCTGTGGAACCATTTCTAAGAATGTTTCACCCCCCTCTCTTT
ACAACATAAA

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCTTTCTGTTTAGACTAC
ATCCCCAGTGAATGCTCATTGCTTTCCAAAATCGTTTTTGTTTTTAATCT
GATTTTCAGGCTTAAGATTGTACTGAAATACTTAATTAAATTTTTCAAGT
CAACTTTACAAGCTGGATAGATTTAAAATTCTTTTTAATCTCAAAGCCAT
CAGTACTGCTTGTTCCAAGTTGAGCTCTAAAATTCCTGGAGACCTCTTCA
GGTTGCTGAGTGATACCGTGAGGAGCTCTACCTCCTCTACCTAGACACAA
AAACATGGACATCGCCTAGGCAAGAGTGTGGATACAGAGAAAGGGAATTC
ACATATACTTTTTGTTGAAACTTATGTTAGTGTGGTCATTGTAGAAACAG
CATAGGTAGCTTTTGAAAACTGAACCTGGAAGTTCCATGAGACCCAACTC
CATCATTCATTTGCAGAGACTGAAAGCAATGAATTGTATAGAAGAATGAA
ATACTAAAATCCATATTGAGGATAGGAGGCCGTAGGATTTTCAAGGAGTC
CATTATGGTAAACAGGATAAAATTTATTGGGAGGAATTATTATAATGGCG
TGTACAACAAAAATAAAAAGTTGGGAAAGGAAAAAAAAAAATTTCCAAAA
AATTCTAAAAAAATTCAACCTTTTAAACTGTAAAAAAAATAACCCTCCCG
AAAAAATAAATTAATTCTTTTTG

Query= MSMg01no440_m22.g1 MSMg01no440_m22.g1 CHROMAT_FILE:
MSMg01no440_m22.g1 PHD_FILE: MSMg01no440_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:23 2005
         (437 letters)



>mm_chr4_78296086_78296921
          Length = 836

 Score =  806 bits (417), Expect = 0.0
 Identities = 432/437 (98%), Gaps = 1/437 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacctttctgtttagactacatccccagtgaatgctcattgctttccaaaatcgtttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 201 cacctttctgtttagactacatccccagtgaatgctcattgctttccaaaatcatttt-g 259

                                                                       
Query: 61  tttttaatctgattttcaggcttaagattgtactgaaatacttaattaaatttttcaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttttaatctgattttcaggcttaagattgtactgaaatacttaattaaatttttcaagt 319

                                                                       
Query: 121 caactttacaagctggatagatttaaaattctttttaatctcaaagccatcagtactgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caactttacaagctggatagatttaaaattctttttaatctcaaagccatcagtactgct 379

                                                                       
Query: 181 tgttccaagttgagctctaaaattcctggagacctcttcaggttgctgagtgataccgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 380 tgttccaagttgagctctaaaattcctggagacctcttcaggttgctgagtgagatcgtg 439

                                                                       
Query: 241 aggagctctacctcctctacctagacacaaaaacatggacatcgcctaggcaagagtgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aggagctctacctcctctacctagacacaaaaacatggacatcgcctaggcaagagtgtg 499

                                                                       
Query: 301 gatacagagaaagggaattcacatatactttttgttgaaacttatgttagtgtggtcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gatacagagaaagggaattcacatatactttttgttgaaacttatgttagtgtggtcatt 559

                                                                       
Query: 361 gtagaaacagcataggtagcttttgaaaactgaacctggaagttccatgagacccaactc 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 560 gtagaaacagcataggtagcttttgaaaactgaaactggaagttccatgagacccaactc 619

                            
Query: 421 catcattcatttgcaga 437
           |||||||||||||||||
Sbjct: 620 catcattcatttgcaga 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 836
Length adjustment: 9
Effective length of query: 428
Effective length of database: 827
Effective search space:   353956
Effective search space used:   353956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)