Query= MSMg01no441_l14.b1 MSMg01no441_l14.b1 CHROMAT_FILE:
MSMg01no441_l14.b1 PHD_FILE: MSMg01no441_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:37 2005
(532 letters)
>mm_chr4_85252677_85253608
Length = 932
Score = 1006 bits (520), Expect = 0.0
Identities = 529/532 (99%)
Strand = Plus / Minus
Query: 1 ctacactcaggaaacatgaatgaggtcatgcatatgataaagtagttctatgtttccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ctacactcaggaaacatgaatgaggtcatgcatatgataaagtagttctatgtttccata 673
Query: 61 tagttttatgattgttgatagacaatatatgcattcagcattagaaatagcagtcattat 120
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 672 tagttttatgattgatgatagacaatatatgcattcagcattagaaacagcagtcattat 613
Query: 121 ttagcatacattgtactacttccaatcatcactgtgctttcaagttatttctatgacatc 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 612 ttagcatacattgtactacttccaatcatcacggtgctttcaagttatttctatgacatc 553
Query: 181 accattccacaaaagggaagcagagactgcttaaggtcgcccagctccttgactccagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 accattccacaaaagggaagcagagactgcttaaggtcgcccagctccttgactccagac 493
Query: 241 acaaattgtgaagtcaggtaaattctttactccaaagtatgcttgatctttttgttcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 acaaattgtgaagtcaggtaaattctttactccaaagtatgcttgatctttttgttcttt 433
Query: 301 gacaaatttgatgctgtctgtaatagcctccatcaacatcccccatctcctaacaccgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gacaaatttgatgctgtctgtaatagcctccatcaacatcccccatctcctaacaccgat 373
Query: 361 tcccatgttttctgctgctcttatatctttatctgtagtacccaacagtaatagtctcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tcccatgttttctgctgctcttatatctttatctgtagtacccaacagtaatagtctcca 313
Query: 421 tctcaagtccaaacccctcctctcactgtgacccttctttgcccccttcaggctccttaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tctcaagtccaaacccctcctctcactgtgacccttctttgcccccttcaggctccttaa 253
Query: 481 tctttccctgtgtcatgactttattgttttagcctccattcctcagtcgctc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tctttccctgtgtcatgactttattgttttagcctccattcctcagtcgctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_l14.g1 MSMg01no441_l14.g1 CHROMAT_FILE:
MSMg01no441_l14.g1 PHD_FILE: MSMg01no441_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:37 2005
(470 letters)
>mm_chr4_85099512_85100381
Length = 870
Score = 851 bits (440), Expect = 0.0
Identities = 461/470 (98%), Gaps = 4/470 (0%)
Strand = Plus / Plus
Query: 1 caggaagctgcttggtccttggtcaggtgggatttacaggaaaacttcatgttttacaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggaagctgcttggtccttggtcaggtgggatttacaggaaaacttcatgttttacaat 260
Query: 61 taatttcacttaacatatgctttcaatattcatgcatatcataacttgtaagattttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatttcacttaacatatgctttcaatattcatgcatatcataacttgtaagattttttc 320
Query: 121 tcctgtcattcggcacctagtctctttctacctttttacttcctcaagagctctgctata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctgtcattcggcacctagtctctttctacctttttacttcctcaagagctctgctata 380
Query: 181 aatgtgattgtggaaaaatatctgacactcatcttttaattctttcacacacacacacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtgattgtggaaaaatatctgacactcatcttttaattctttcacacacacacacac 440
Query: 241 acatatacacacacacacacacacacacacacacacatgttcaataaaatagtaattctg 300
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 aca----cacacacacacacacacacacacacacacacgttcaataaaatagtaattctg 496
Query: 301 tgtttaattttgttcttttttgttgttgtttgagacaaagtctgtatatgtcatcctggc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 497 tgtttaattttgttcttttttgttgttgtttgagacaaagtctgtatatgtcgtcctggc 556
Query: 361 tatcctagaactcagtgctaagactgaaaatatatgccaccactcctagcctgtatttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tatcctagaactcagtgctaagactgaaaatatatgccaccactcctagcctgtatttaa 616
Query: 421 actttttgaggagcagcagtcatatttttccttccagctttgtatttcta 470
||||||||| ||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 617 actttttgaagagcagctgtcatattttttcttccagctttgtatttcta 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
