BAC Information

Click to search

BAC

Clone NameMSMg01-441M20
Chromosome4 (Build37)
Map Location 139,254,352 - 139,254,796
singlet/doubletsinglet
Overlap genenone
Upstream geneUbxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2
Downstream genePax7, Gm1667, Klhdc7a, Igsf21, LOC100040728, Arhgef10l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441M20.T7 (MSMg01no441_m20.b1)MSMg01-441M20.TJ (MSMg01no441_m20.g1)
ACCAG531599AG531600
length806799
length of high quality
(start - end)
278 (43 - 320)445 (73 - 517)
definitionCHROMAT_FILE: MSMg01no441_m20.b1 PHD_FILE: MSMg01no441_m20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:43 2005CHROMAT_FILE: MSMg01no441_m20.g1 PHD_FILE: MSMg01no441_m20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAGTCCTCATGTCAGNTATACGACTCACTATTTCGAGAGGATCCGCGGAA
TTCTCCTCTGTACCAACAGACTGGGAGGAAGAAGCAGCCCATTACCAGCC
AGCTAATTGGTCAAGAAAAAAGCCAAAAGCGGCTGGCGAAAGCCAGCGTA
CTGTTCAACCTCCCGGCAGTCGGTTTCAAGGTCCGCCCTATGCGGAGCCC
CCGCCCTGCGTAGTGCGTCAGCAATGCGCAGAGAGGCAATGCGCAGAGAG
ATGCGCAGAGAGGCAATGCGCAGAGAGATGCGCAGAGAGGCAGTGCGCAG
AGAGATGCGCAGAGAGGCAGTGTTCAGAGAGATGCGCAGAGAGGCAGTGC
GCAGAGAGGTAGTGCGCAGACTCATTCATTCCCAGAGAGGAACAAAGGAA
AATACAACAGGCATTTCCGGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCC
ACGCTCCGGTAGAATACTTACAAATTATAGAAATTGCCGAGCCGGTCCGT
ACATACGGAACCAATGCTAATTTTACCTTGCCGCCGTTATACCGGCCTCG
CTGGCATGGCACTAACTTCCTGTTGACTGGCAAACGGTTGTAAAAGTCGC
TCTCCCCAGCATGGGTATATACATGGAATGGAGACCGGTCTTGTATCTAA
TATGTATTAGCGTCATTCCTGATATAAAACCCTTCTGTTTTTTACTCTCC
CATCCCATTATTTTGCCCCCCTTTCATATTTATCATCGGTATTCTCTTAT
ACTTATTTTCCGTCGACCCCACCTCCCCACCCTTTCTGCTCATCTTCATT
TTTTCG
AATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGCCCCCCCCCCTCCTGAGTTCTCGTTC
CCAGCAAAAGACCTTGGCAGGACCCCTGATGCTCTGCCTTTCCTGGGACG
GATGGCTTCCAGCTGCCCACACCAAGCCTGGGAAAATTCCTCCGAGCTCT
ACAGGTCCTTGGATCCTGAAACCTGAGTGGCTCCCTCCATCAGCCCAGCC
AACGAAAGCTCCCTCATCCTGCAACACCAAGCCTGCCAGATAGATCCATC
ACAGGGAGAGGGTGCAGAATGTCAGGGAGGGCTCCAGACAGACACGGCCC
CAGTCACCAGCCACTGTGTGCCCTTGGTTACAAACTGGTGAGGTGAACTG
GGATCACCGACAGCCTGGGGAGTCCGGCATTTTACATATAGGGAAACTGA
GTCTCAGAGATGTTCCCACCAGTGTAGAGAACGAAGCTGCACAGTAGGCT
GGGGTGTTATGAGATGAACCACACGAGACACAGAGGCCCTCCCAGCCTGC
CGATCTGAACGTGTTCCTCTGCTGCAGAAACTGTCCCTTGTTGTCCCCGA
AAAAGGTTTCCTCCAATGAGGCCCCCCCCAATTTTCCCCCAATTTTCCCC
CAAAAATCTTTCCCCACCCCCCAAAATTTTTCTCGTAAAAAATTTTCTTG
GCAGCCCTCCAAAACTTTCCCCCTAATTTTTTCTCTCCGCGGTCGTTTCC
TCCCCTCTTCCCATGTTTATACTAACTCACCTGGTTGGTGGTTCTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_m20.g1 MSMg01no441_m20.g1 CHROMAT_FILE:
MSMg01no441_m20.g1 PHD_FILE: MSMg01no441_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:43 2005
         (445 letters)



>mm_chr4_139254242_139255086
          Length = 845

 Score =  845 bits (437), Expect = 0.0
 Identities = 443/445 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcccccccccctcctgagttctcgttcccagcaaaagaccttggcaggacccctgatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgcccccccccctcctgagttctcgttcccagcaaaagaccttggcaggacccctgatgc 496

                                                                       
Query: 61  tctgcctttcctgggacggatggcttccagctgcccacaccaagcctgggaaaattcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tctgcctttcctgggacggatggcttccagctgcccacaccaagcctgggaaaattcctc 436

                                                                       
Query: 121 cgagctctacaggtccttggatcctgaaacctgagtggctccctccatcagcccagccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cgagctctacaggtccttggatcctgaaacctgagtggctccctccatcagcccagccaa 376

                                                                       
Query: 181 cgaaagctccctcatcctgcaacaccaagcctgccagatagatccatcacagggagaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cgaaagctccctcatcctgcaacaccaagcctgccagatagatccatcacagggagaggg 316

                                                                       
Query: 241 tgcagaatgtcagggagggctccagacagacacggccccagtcaccagccactgtgtgcc 300
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgcagaaagccagggagggctccagacagacacggccccagtcaccagccactgtgtgcc 256

                                                                       
Query: 301 cttggttacaaactggtgaggtgaactgggatcaccgacagcctggggagtccggcattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cttggttacaaactggtgaggtgaactgggatcaccgacagcctggggagtccggcattt 196

                                                                       
Query: 361 tacatatagggaaactgagtctcagagatgttcccaccagtgtagagaacgaagctgcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tacatatagggaaactgagtctcagagatgttcccaccagtgtagagaacgaagctgcac 136

                                    
Query: 421 agtaggctggggtgttatgagatga 445
           |||||||||||||||||||||||||
Sbjct: 135 agtaggctggggtgttatgagatga 111


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)