NNCCTCGCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTA
TTTGATTTTCTGGAGTCCACCTTCTTGAGATCTTTATATATATTGGATAT
TAGTCTCCTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTG
GTGGCCTTTTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGC
AATTTTATGAGGTCCCATTTATCAATTCTTGATCTTACAGCACAAGCCAT
TGCTGTTCTATTCAGGAATTTTTCCCCTGTACCTATATATCTTTGAGGCT
TTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGA
GTTCTCTTACACGCGTTCTCGTGACCGGCCAGGAAGAACACAGCAAACCA
AAATCTTCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGAG
CAAGAGAGCAAGAGGGCAAGAAGAAGAACAAGAGCAAGAAAGAGAGAAAA
AAACAAGAGCAAGATAAAGAACAAGAGCAAGAAAGCTAGAGCAAGAAAAA
GAACTAGAACCAGAAAGCCAGAAGAACATGAAAGCGCGAGAAAGACTCAG
AGCCAGAAAAAGCTTGAGAGAAAAATAGCCTGAACTAGAGAGAGGATAAG
AATGCGTCCCCCCCGCCCCTTTTTATGGAGATTAATCTTC

NNTTCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGGGATATGCCAGTGTATTGG
GATGGGGGAATTCTATATAGGCATTTTTCCCATGGCCAAGACATGTATCA
GAAGAGAGGAACAGGGTTTAAAATGAAGTAAGATAAAATAAAATAAAATA
ATAAAACAAAATAAAATAAAGAGAAAAATACCCTCCCTCAAAAAAAAAAA
AAAAAAAAAAAAAACCACCACCACCAACAAAAAGATGTTAGAAGAATTCT
TAGCTCAAGTATATTTATGCTGTGCATGGTTCCCGGAAGTAGGAATGGTT
AATATACATATGACATGAGAAAGAGAGAGAAAGAATAAGTTTCAGAAAAG
CAGTTGTCCTCTGTCTGGGATGAGTCAGCAAAAATGAAAGAAAATCAATT
TCCCAGATCTCCTAGGGACAGGAGGAAATCAGGAGATGTCCTGTTTCCTC
TCTGGCTCCTACTGGAGATATCCTTAGTTCTGATTCTTCCCTCTCTGTGT
ATTGTCTGTCCTTGGTACACCAATCTGTCTATGTGTGACAATTTTGTCTG
AATGACTGTTGTTCTATGTTTCATGTTCAAAAGAAAAAAATGGTTAAAAC
TTTATCTACTGGCTATAAATCTATTAGTTTAGAAGGCTGGCTAAGTTTGC
CAGAGCAAAAACTCATAAGTACCTTACTCTGGAATGGGAAGCCAGCACAC
TG

Query= MSMg01no441_n04.g1 MSMg01no441_n04.g1 CHROMAT_FILE:
MSMg01no441_n04.g1 PHD_FILE: MSMg01no441_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:45 2005
         (470 letters)



>mm_chr4_72862341_72863210
          Length = 870

 Score =  812 bits (420), Expect = 0.0
 Identities = 452/470 (96%), Gaps = 12/470 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctagggatatgccagtgtattgggatgggggaattctatataggcatttttcccatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tctagggatatgccagtgtattgggatgggggaattctatataggcatttttcccatggc 617

                                                                       
Query: 61  caagacatgtatcagaagagaggaacagggtttaaaatgaagtaagataaaataaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 caagacatgtatcagaagagaggaacagggtttaaaatgaagtaagataaaataaaataa 557

                                                                       
Query: 121 aataataaaacaaaataaaataaagagaaaaataccctccctcaaaaaaaaaaaaaaaaa 180
           |||||||||| ||||||||||||||||||||||||||||||||            |||||
Sbjct: 556 aataataaaataaaataaaataaagagaaaaataccctccctc------------aaaaa 509

                                                                       
Query: 181 aaaaaaaaccaccaccaccaacaaaaagatgttagaagaattcttagctcaagtatattt 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aataaaaaccaccaccaccaacaaaaagatgttagaagaattcttagctcaagtatattt 449

                                                                       
Query: 241 atgctgtgcatggttcccggaagtaggaatggttaatatacatatgacatgagaaagaga 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atgctgtgcatggttcccagaagtaggaatggttaatatacatatgacatgagaaagaga 389

                                                                       
Query: 301 gagaaagaataagtttcagaaaagcagttgtcctctgtctgggatgagtcagcaaaaatg 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 388 gagaaagaataagtttcagaaaagcagttgtcccctgtctgggatgagtcagcaaaaatg 329

                                                                       
Query: 361 aaagaaaatcaatttcccagatctcctagggacaggaggaaatcaggagatgtcctgttt 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaagaaaatccatttcccagatctcctagggacaggaggaaatcaggagatgtcctgttt 269

                                                             
Query: 421 cctctctggctcctactggagatatccttagttctgattcttccctctct 470
           |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 268 cctctctggctcctactggagatatccttagttctgattcttccttctct 219


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)