BAC Information

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BAC

Clone NameMSMg01-442A17
Chromosome4 (Build37)
Map Location 11,577,786 - 11,711,393
singlet/doubletdoublet
Overlap geneLOC100039862, Gem, Cdh17
Upstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik
Downstream genePpm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442A17.T7 (MSMg01no442_a17.b1)MSMg01-442A17.TJ (MSMg01no442_a17.g1)
ACCAG531783AG531784
length736771
length of high quality
(start - end)
467 (70 - 536)364 (77 - 440)
definitionCHROMAT_FILE: MSMg01no442_a17.b1 PHD_FILE: MSMg01no442_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:03 2005CHROMAT_FILE: MSMg01no442_a17.g1 PHD_FILE: MSMg01no442_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,710,927 - 11,711,393)(11,577,786 - 11,578,149)
sequence
NTCTAAATTTGCGCCGCNAAACGAATCCTATTCAACACGATCCGCGGAAT
TCCTTATTTCCCCAATCTAAACCTTCCTAATGCTGAGACCCTTTAATACA
ATTCCTCATGTTTTGGTAACCCCAACCATAAAATTATTCTTATTGCTACT
TAAATAGCTGTAATTTTGTTACTGCTATGGATCGCAATGTAAATATCTGA
TAAGCAGGATATCCAATGTGACCCCTATGAAAGGGTCATTCAACCCCCAA
AGGTTGAGAACAACTGACTTAGACTCATTCATTCATTCATTTAGTTGAGA
CACATGATGAGGGTTACTCCCTCAAATATTAAAGGCTGAAAGATCTCAGA
AATAAAAATAACCACTGACCCCTAGTTATCCTCCAAACAACAACAAAAAA
TATTCAAAAGTAAGGCCTGATACATAGACAAGGCCTGGTTTCTCTGATAT
TATTACTAACAACATATATTTATGGTATACCACATGCCATTCAACCTACT
ATAAAGCAGCTATATTTCACACTGCTGAATGAAAACAATAAAACACCACA
ATAAAGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGCGTCCCCCCC
CTCATTCTCCCATTCCCTCTTTATTTCATTATTTTATTCCACCTTTTTTT
TTTTCCCACAAATTTTCTTCCCCGCGCCCATTTTTCTTATCTTTTTATTT
TCCTCCCTTCTACCTCTTTTTAACTCAACATTATCT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACTCGGGCTCTGACATGAAAAC
CTTTCTCCACCGAGGCTGTAAGCTTGCTTTCTGTATTTCCTCAAAACAGG
TACCAACAGCTGCATGACAGCTCTCTGGAATGGTCTCTCTCTGACTGAGG
CTGGAGTTTTAATGTGTTTGAATTTGTAAAGACTGTGGGATTTTTAAAGT
TATTATGTTTTATATAATGAATATTAATATACCATCTTCAGGATAAATGA
GGAGGGAAAGGTTCTAATTGATAAGGGATGTGTTCGTGTGTTAAGCCTAG
GAGTAAGGGTGTACGCCTTTAATCCCAGCATTTGGGAAGCAGTGGCAGGC
AGAAGTTGAAGCCAGCCTGATCTACAGATCAAGTTTCAGGACATCCAAGA
AACCCTACTTCAAAACATCCCCATCCTACCCCCCCCCTAAAAAAAAATAT
AAAAAAAGAATACCCTCATGTTTGTGGGTCAACTTGACATGGGATTGGTT
CCCCTGGCTGGTTTTATGCCAACTTGACTGAAGCTATAGTCATTTTGAAA
TAAAAAATACCCCTATTAATAAAAACTCCCCCCTATATGTCCGGATGCTC
ATCCACCCGTTCGGTCTTTTTACCTAATTACCTATTTACCTTGGGAAGGG
CTCCCACATCATTATGTGGGGGTGGTCTTTTTTTGGGTCTGTATTTCCCA
ACTGCTCCCCTCTTCCAGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_a17.b1 MSMg01no442_a17.b1 CHROMAT_FILE:
MSMg01no442_a17.b1 PHD_FILE: MSMg01no442_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:03 2005
         (467 letters)



>mm_chr4_11710543_11711409
          Length = 867

 Score =  888 bits (459), Expect = 0.0
 Identities = 465/467 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccttcctaatgctgagaccctttaatacaattcctcatgttttggtaaccccaaccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 aaccttcctaatgctgagaccctttaatacaattcctcatgttttggtaaccccaaccat 792

                                                                       
Query: 61  aaaattattcttattgctacttaaatagctgtaattttgttactgctatggatcgcaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 aaaattattcttattgctacttaaatagctgtaattttgttactgctatggatcgcaatg 732

                                                                       
Query: 121 taaatatctgataagcaggatatccaatgtgacccctatgaaagggtcattcaaccccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 taaatatctgataagcaggatatccaatgtgacccctatgaaagggtcattcaaccccca 672

                                                                       
Query: 181 aaggttgagaacaactgacttagactcattcattcattcatttagttgagacacatgatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aaggttgagaacaactgacttagactcattcattcattcatttagttgagacacatgatg 612

                                                                       
Query: 241 agggttactccctcaaatattaaaggctgaaagatctcagaaataaaaataaccactgac 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 611 aggggtactccctcaaatattaaaggctgaaagatctcagaaataaaaataactactgac 552

                                                                       
Query: 301 ccctagttatcctccaaacaacaacaaaaaatattcaaaagtaaggcctgatacatagac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ccctagttatcctccaaacaacaacaaaaaatattcaaaagtaaggcctgatacatagac 492

                                                                       
Query: 361 aaggcctggtttctctgatattattactaacaacatatatttatggtataccacatgcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aaggcctggtttctctgatattattactaacaacatatatttatggtataccacatgcca 432

                                                          
Query: 421 ttcaacctactataaagcagctatatttcacactgctgaatgaaaac 467
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttcaacctactataaagcagctatatttcacactgctgaatgaaaac 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no442_a17.g1 MSMg01no442_a17.g1 CHROMAT_FILE:
MSMg01no442_a17.g1 PHD_FILE: MSMg01no442_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:03 2005
         (364 letters)



>mm_chr4_11577586_11578349
          Length = 764

 Score =  673 bits (348), Expect = 0.0
 Identities = 360/364 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcactcgggctctgacatgaaaacctttctccaccgaggctgtaagcttgctttctgtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcactcgggctctgacatgaaaacctttctccaccgaggctgtaagcttgctttctgtat 260

                                                                       
Query: 61  ttcctcaaaacaggtaccaacagctgcatgacagctctctggaatggtctctctctgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcctcaaaacaggtaccaacagctgcatgacagctctctggaatggtctctctctgact 320

                                                                       
Query: 121 gaggctggagttttaatgtgtttgaatttgtaaagactgtgggatttttaaagttattat 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gaggctggagttttaatgtgtttgaatttgtaaagactgtggaatttttaaagttattat 380

                                                                       
Query: 181 gttttatataatgaatattaatataccatcttcaggataaatgaggagggaaaggttcta 240
           ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 gttttgtataatgaatattaatataccatcttcaggataaataaggagggaaaggttcta 440

                                                                       
Query: 241 attgataagggatgtgttcgtgtgttaagcctaggagtaagggtgtacgcctttaatccc 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgagaagggatgtgttcgtgtgttaagcctaggagtaagggtgtacgcctttaatccc 500

                                                                       
Query: 301 agcatttgggaagcagtggcaggcagaagttgaagccagcctgatctacagatcaagttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcatttgggaagcagtggcaggcagaagttgaagccagcctgatctacagatcaagttt 560

               
Query: 361 cagg 364
           ||||
Sbjct: 561 cagg 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)