BAC Information

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BAC

Clone NameMSMg01-442F04
Chromosome4 (Build37)
Map Location 36,161,396 - 36,161,637
singlet/doubletsinglet
Overlap genenone
Upstream gene3110043O21Rik, LOC621227, Lingo2
Downstream geneLOC100042132, LOC545600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442F04.T7 (MSMg01no442_f04.b1)MSMg01-442F04.TJ (MSMg01no442_f04.g1)
ACCAG531996AG531997
length788861
length of high quality
(start - end)
462 (48 - 509)241 (80 - 320)
definitionCHROMAT_FILE: MSMg01no442_f04.b1 PHD_FILE: MSMg01no442_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:26 2005CHROMAT_FILE: MSMg01no442_f04.g1 PHD_FILE: MSMg01no442_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTACTGTCCCTGGTATTACACTATCTCTTTGAGTAAAAGTTA
GGTCACTGCCCTTCACAGGAATTTACCATCACTAAGGAAGAAAGAAGTTT
CTGACCGTAGGAGAAACCAGAATAGATATTTAGAATTATAGCTGAGTCAC
ACCTATATACAGGAATTTACAATGGTTTAGGAAGTAGATCCGGCTGTGGT
TTTAGAGTATTGCATTATTCATGAGATGGTTAGCTAGAATGGAACTCCCT
AGTTAGAACCATGACTTGGGTGTGAAAGCCCTTGTCCTAGGAGTGAAAAG
TTCTCACACCTGGCTTCTAAGACTATAGCTGACCTTAGATAGGGCTGACT
CTGTCTCAGTTATTTTATTGCCCAGTTCCTGCCAGTCTTTGCGTTTTCAT
TCCTCTGTTCTGTGTAAGAGTCATTAAGCATCCGGTTACCTTCATTTGTA
CCTTGTGGGTATGTCACCCAACTACCTTGTTGTCTTCTGCATAAACAGTC
TGATGTTCGATTTGACATATTACCTTCCCATTTCATTCTAATTCCCCTGT
GTGGGCGTCTGTCTGTCATTTTTCCCCGCCTTTGTCCTTCCGTGGTCTAG
AGCCCCCGTTTTCTCTGTTCATCTGCGGTATTCTTTATTCCTCTGTGAAC
ACACTCCGTCGTTTCTACTTGGCCCTCTTTCTTACAGAATTCCTCTCTCT
ACTTCCTTCTCCTCTCTCTTTCTTTGTATTCCAACTTN
CTCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTCTTTAACTTTATATCA
CTTCCATAGATCAAATTTCAGATAATCACATTTGGCAGCAAGCCTTTTTA
TGTACAAAACCTTTCTGAGTGTGTTCTTAAAGGTCATAAATATAATATGC
AGCATGTGAATTTTGTGGATTGTATATTTGTAAATTAGAATGATGAAGAG
GTTTCTACGGTATTAAACATCATTTATAAGTGATTATTTTATATTTATTA
AATTTTAAACATCATTAAGGAATATTTTTATTATAGATTTATTTCTACTC
TTTTATTTTTTTATTTTTCCCCTCCTTTATTTATTTTTTTTCTTTTTTCC
CACTCTTTTTTATTTCCTCTCCCCCCCCCCCTTCTTTTTCTCCTCCCTTC
TTTTCTTCCCCCCCTCCTTTCTTATCCCTTTTCTCTTTCTCCTTCTTTCC
ACCTCTCTTCTCCTTTCTTCTCTTTCCTCCCTTTCCTCTCACTTCTTTTT
CTCTCCCCCTCTTTTCTTTCCATATCTCATTCCTCATCTTACTTTTTCCT
CATATTATATCTTTCTTTTTCTTCCCCCTTTTTTCTTTTTTATCCCCCCT
TTCACCCTTCTTATTCTTTTTTTTTTTTCTCCCCTCTCTCTATTTTTCCT
GCCCCTCCTCTTCCTTTTGCTTATTTATTATTTTCTCCCTCCACCCCCCC
CTATCTTTTATTCCTCCTTTTTTTTATCTTAACTTCTTCCCCCACCTCCC
CCTCTATCACTTTCTTTTACACATTGTACCCTCCCCCACTTACCTCTCTT
CTCGCTTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_f04.g1 MSMg01no442_f04.g1 CHROMAT_FILE:
MSMg01no442_f04.g1 PHD_FILE: MSMg01no442_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:26 2005
         (241 letters)



>mm_chr4_36161196_36161837
          Length = 642

 Score =  422 bits (218), Expect = e-122
 Identities = 236/242 (97%), Gaps = 1/242 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctctttaactttatatcacttccatagatcaaatttcagataatcacatttggcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccctctttaactttatatcacttccatagatcaaatttcagataatcacatttggcagc 260

                                                                       
Query: 61  aagcctttttatgt-acaaaacctttctgagtgtgttcttaaaggtcataaatataatat 119
           |||||||||||| | | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 aagcctttttatctaaaaaaacctttctgagtttgttcttaaaggtcataaatataatat 320

                                                                       
Query: 120 gcagcatgtgaattttgtggattgtatatttgtaaattagaatgatgaagaggtttctac 179
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 321 gcagcatgtgaattttgtggattgtatatctgtaaattagaatgatgaagaggtttctag 380

                                                                       
Query: 180 ggtattaaacatcatttataagtgattattttatatttattaaattttaaacatcattaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtattaaacatcatttataagtgattattttatatttattaaattttaaacatcattaa 440

             
Query: 240 gg 241
           ||
Sbjct: 441 gg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 642
Length adjustment: 9
Effective length of query: 232
Effective length of database: 633
Effective search space:   146856
Effective search space used:   146856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)