NTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGTCATCTTTCACACTCAAGGAGAGCCTGGAAAGATGGCTCAGT
TGTTAGGAATATGGGCTACTCTTCTAGAAGACCTGGGTTCAATTCTCAGC
ACCCTCATGGCAGCTCCTAACCATCTGCAATTCCAGTTTCAGGGAACCTG
ACACCCTCACACAGACATAAATGCAGGCAAACCTTCAATGCACAAAAAGT
AAAAATAAAATAAAATAATAAAATAAAAGAGGCAATGAGCATTTCCTATT
GGCATGGACCCAAAGGGTGATGTTTTCCACCATTTATTTCATGAGCAGCT
ATACAATAGGTCAACAACTAGGCATATTATAGGTATAGTGAAAAATCAAC
AGGGCCTATAGAGAGAGAGCTCAGTGGCTAAGAACACGCACTACTGCTTA
GGATCTTATCTCACCCCTGAATCTTGACATGGTATGTTTTACAACCTTTT
TGTATGTTTTCCTTTTCGAAACCTGGTTTCTTTTCTTAAAACTCTGTTGT
GTATTGCCCCTCCATAAATTACTTTCGGCCCACTTCTTCTTATTCTCCTC
TATTTTCTTTTTTATTTTACCCCCTCCCATTTTTTCCTCCCCCCCCCTCT
TTATACTCCACTTGTCGATTCGCCCATTTCTCTATTTTCTTTCCCTTCCT
CTCCTTCTTTTCCTTTCTCTCTCTCCTTCCACTTTTCACTTTTTTTTCAC
CCCCCCTTTTTTACCCCTATGTTTCTCCTCTTTTTTTTTTTTTCTCCTCC
CTCTCTTTTTTTTATTCCTACTCTTTCACCTCCCCCC

NCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACTTAATATTTGCCTTTATAGCT
CAATAGCCAGAGCGTGGGCACATAGCCACATTAGCGGTACCTAGGGGGAG
GATTACCCTGAATAAAGTTTGGGTGTGGCTAATAAGTCATAAAACCCAAG
CCAATACTGAGTATCTACTCCATCTCATGTGCTTTGACCTATGGTTTGGC
TTTCTTATTCCCATGAGAGCTCACATATCTGGAACAGGACCTGTTGCCCA
GAACAGAGTGTGAAGTAGTTTGAGTTTATCTCTGGGTTTCCTGTCATCTG
AGTTCCAGCCTCCTTCCTCCTAAGGATCTTGTAATAAACTCTTGAATCTG
ACTGAACACGGATCCCAGCATTTGTCCAGAGTTTAGAAACACATATGCCA
CGCGCACAAGGTCTCATTGGTCCTGACATTTCTACAAAACTTCCCTGTTG
TAAAGTACCATCCTTGCTAGGCTTGATCCCCCAAACAGGTGCTTGGTTGG
TCCCACCCCGATTCTCTTTGTCCATCTTTCGGTCTTCTACTTTTTTTTGC
CCCTCTTCCTTCCTTTCTCCCCCTATTATTCTACCTTTTTCTTATCCTTT
CCTCTACTCTCTTATCTCCATTTCCTTGTTCTTTTTTTTCCTCCTTCTCC
CGCTATCCCTCTCTTCTTCCTCTCCTCTCTTCTTCCTGCATCCCCCTCCT
CTTCTTCTTCCTCCCCACGCTCCCTTTCTTCTCTCTCCCTATCACTTTAT
CTATACTCCCTTCACTCCTCTTTTTG

Query= MSMg01no442_h19.b1 MSMg01no442_h19.b1 CHROMAT_FILE:
MSMg01no442_h19.b1 PHD_FILE: MSMg01no442_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:40 2005
         (326 letters)



>mm_chr4_100090585_100091310
          Length = 726

 Score =  555 bits (287), Expect = e-162
 Identities = 311/319 (97%)
 Strand = Plus / Minus

                                                                       
Query: 8   gagcctggaaagatggctcagttgttaggaatatgggctactcttctagaagacctgggt 67
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gagcctggagagatggctcagttgttaggaatatgggctactcttctagaagacctgggt 667

                                                                       
Query: 68  tcaattctcagcaccctcatggcagctcctaaccatctgcaattccagtttcagggaacc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tcaattctcagcaccctcatggcagctcctaaccatctgcaattccagtttcagggaacc 607

                                                                       
Query: 128 tgacaccctcacacagacataaatgcaggcaaaccttcaatgcacaaaaagtaaaaataa 187
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 606 tgacaccctcacacagacataaatgcaggcaaacatccaatgcacaaaaagtaaaaataa 547

                                                                       
Query: 188 aataaaataataaaataaaagaggcaatgagcatttcctattggcatggacccaaagggt 247
           |||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||
Sbjct: 546 aataaaataataaaataaaagaggcaatgaacatttcctactggcatgggcccaaagggt 487

                                                                       
Query: 248 gatgttttccaccatttatttcatgagcagctatacaataggtcaacaactaggcatatt 307
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 486 gatgttttccaccatttatttcaagagcagctatacaataggtcaacaactaggcatatt 427

                              
Query: 308 ataggtatagtgaaaaatc 326
           ||||| |||||||||||||
Sbjct: 426 ataggcatagtgaaaaatc 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no442_h19.g1 MSMg01no442_h19.g1 CHROMAT_FILE:
MSMg01no442_h19.g1 PHD_FILE: MSMg01no442_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:40 2005
         (362 letters)



>mm_chr4_99927323_99928084
          Length = 762

 Score =  685 bits (354), Expect = 0.0
 Identities = 360/362 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacttaatatttgcctttatagctcaatagccagagcgtgggcacatagccacattagcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacttaatatttgcctttatagctcaatagccagagcgtgggcacatagccacattagcg 260

                                                                       
Query: 61  gtacctagggggaggattaccctgaataaagtttgggtgtggctaataagtcataaaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtacctagggggaggattaccctgaataaagtttgggtgtggctaataagtcataaaacc 320

                                                                       
Query: 121 caagccaatactgagtatctactccatctcatgtgctttgacctatggtttggctttctt 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagccaatactgagtatctattccatctcatgtgctttgacctatggtttggctttctt 380

                                                                       
Query: 181 attcccatgagagctcacatatctggaacaggacctgttgcccagaacagagtgtgaagt 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcccgtgagagctcacatatctggaacaggacctgttgcccagaacagagtgtgaagt 440

                                                                       
Query: 241 agtttgagtttatctctgggtttcctgtcatctgagttccagcctccttcctcctaagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtttgagtttatctctgggtttcctgtcatctgagttccagcctccttcctcctaagga 500

                                                                       
Query: 301 tcttgtaataaactcttgaatctgactgaacacggatcccagcatttgtccagagtttag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttgtaataaactcttgaatctgactgaacacggatcccagcatttgtccagagtttag 560

             
Query: 361 aa 362
           ||
Sbjct: 561 aa 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)