BAC Information

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BAC

Clone NameMSMg01-442K07
Chromosome4 (Build37)
Map Location 52,950,967 - 52,951,320
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1
Downstream geneOlfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442K07.T7 (MSMg01no442_k07.b1)MSMg01-442K07.TJ (MSMg01no442_k07.g1)
ACCAG532239AG532240
length783791
length of high quality
(start - end)
448 (49 - 496)383 (80 - 462)
definitionCHROMAT_FILE: MSMg01no442_k07.b1 PHD_FILE: MSMg01no442_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:54 2005CHROMAT_FILE: MSMg01no442_k07.g1 PHD_FILE: MSMg01no442_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTTTCTCTGAACCCCATTTTTAATGGGGTTATTTGAA
TTTCTGGAGTCCAGCTTCTTAAGCTCTTTGTATATGTTGGATATTAGTCC
CCTATCAGATTTAGGATTGGTAAAAATCCTTTCCCAATCTGTTGGTGGCC
TCTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATCTTA
TGAGGTTCCATTTGTCAATTCTTGATCTTACAGCGCAAGCCATTGCTGTT
CTGTTTAGGAATTTTTTTCCTGTGTTTTTATCTTGGAGGCTTTTCCCCAC
TTTCTCCTCTATTCATTTCAGTGTCTCTGGTTTTATGTGCAGGTCTTTGA
TCCATTTAGACAAATTTTTAATCTACATTCTCATGGAACAGAGTATGGAG
TCAACAATTAAGAAAGGAATACTTATATAGCATTTAATTGTGAAAGCTAT
TTGATAGAACATTAATAGATACAGGGAGGAAAGTCTATAGAATTACGACG
AAAGGGTGATTTTCCTCTTTTTCGCCCCCCCTTCCTTTTTCTCTCTTTTT
CCTTTCACTTATTTTATACCTGCCATTGCTATTTTCTTGTTGTTGTGATG
TTTTCTTCTATATCTACTCTTTGTTTTTTTGCTCACTCATAACATCCCGG
TCCCTGTTTTCCCCGTTTCTGTTTCTTTTTTATTTCTTCTTCTCCCATCT
TCTTCTTTCTCTTTAACTGTGATAAGACAAACN
NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGAGTAAGGATTCTGGAGGC
AAGAGCCAGCACCCCTGATTTCTGGGTGATTGCAGTGGATATTTTCTGAT
GATCACTCAGTGAGAAAGGTCATGAAACTTTCCTGTTGGTGAATGTCTTT
GTAATTGCAGGCTTTCCTTTGGATTCCTTCAGATTAGACCTGGGTAGCTA
TCAATTAAAAGATGCTTGCATTAGAAAATGAGAAAATAAGCCATAGGCTA
GAAAGCAATATAGATAAATCATAAATATGATTAAAGACTCAGCCATCTAT
CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT
ATCTATCTATCTATCTATCTATCTCTCTGTGTGTGAGTGTGTGTATGTGT
GTGTGTATGAANANCTATGATNATTCTACATTCTATTAAAATTTGAATAT
TTTTTACNATACATTTTCATCTTTTCACCCCCCTTTTATTTTTTCCTGTC
TCATCATAAAATGTACCCTGCTCTTTCGTGTATTTTTCTCTTTTTCTATT
TTCTTTTTCCACTTGTTTCTCCCCTACCCCTTCTCACTGTTCTTATATCT
CCTTTTGCTCTCTTATTTTTTGTTCCTTCTTCTTCTTCTTTCATTACACC
TTCTTTTACTCTTTCTTTTCTTCTTCTTTTCTTCTCTTATTTCTTATCTT
TTCTTTTACTCTCTTTCTTCTCCCCACTTATTCCCTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_k07.g1 MSMg01no442_k07.g1 CHROMAT_FILE:
MSMg01no442_k07.g1 PHD_FILE: MSMg01no442_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:54 2005
         (383 letters)



>mm_chr4_52950860_52951641
          Length = 782

 Score =  574 bits (297), Expect = e-168
 Identities = 347/375 (92%), Gaps = 21/375 (5%)
 Strand = Plus / Minus

                                                                       
Query: 3   gagtaaggattctggaggcaagagccagcacccctgatttctgggtgattgcagtggata 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 461 gagtaaggattctggaggcaagagccagcacccctgatttctgggtgattgcaatggata 402

                                                                       
Query: 63  ttttctgatgatcactcagtgagaaaggtcatgaaactttcctgttggtgaatgtctttg 122
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 401 ttttctgatgatcactcagtgagaaaggtcattaaactttcctgttggtgaatgtctttg 342

                                                                       
Query: 123 taattgcaggctttcctttggattccttcagattagacctgggtagctatcaattaaaag 182
           |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 341 taattgcaggctttcctttggattccttcagaatagacccgggtagctatcaattaaaag 282

                                                                       
Query: 183 atgcttgcattagaaaatgagaaaataagccataggctagaaagcaatatagataaatca 242
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 281 atgcttgcattagaaaatgagaaaataagccataggctag-aagcaatatagataaatca 223

                                                                       
Query: 243 taaatatgattaaagactcagccatctatctatctatctatctatctatctatctatcta 302
           |||||||||  |||||||    ||||||||||||||||||||||||||||||||||||||
Sbjct: 222 taaatatgacaaaagact----catctatctatctatctatctatctatctatctatcta 167

                                                                       
Query: 303 tctatctatctatctatctatctatctatctatctatctatctctctgtgtgtgagtgtg 362
           ||||||||||||||||             |   |||||||||||| ||||||||||||||
Sbjct: 166 tctatctatctatcta-------------c---ctatctatctctgtgtgtgtgagtgtg 123

                          
Query: 363 tgtatgtgtgtgtgt 377
           |||||||||||||||
Sbjct: 122 tgtatgtgtgtgtgt 108


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 782
Length adjustment: 9
Effective length of query: 374
Effective length of database: 773
Effective search space:   289102
Effective search space used:   289102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)