Query= MSMg01no442_l04.b1 MSMg01no442_l04.b1 CHROMAT_FILE:
MSMg01no442_l04.b1 PHD_FILE: MSMg01no442_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:59 2005
(254 letters)
>mm_chr4_70091410_70092063
Length = 654
Score = 462 bits (239), Expect = e-135
Identities = 248/251 (98%)
Strand = Plus / Minus
Query: 1 ggggagcagagagacttttcctagcagttgcagcacaggtgtgtattgactatacatcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ggggagcagagagacttttcctagcagttgcagcacaggtgtgtattgactatacatcac 392
Query: 61 agagttccaaagtgctgagcacaatggctgcctcccagataccccatctcctgccaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 agagttccaaagtgctgagcacaatggctgcctcccagataccccatctcctgccaaaat 332
Query: 121 aagtggaaaggagacaaaagccaaacgtttgttaaacagttcacacaataaataaatgtt 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aagtggaaaggagataaaagccaaacgtttgttaaacagttcacacaataaataaatgtt 272
Query: 181 tatatgagtttaagagccaaagtaaacagccgagattccagctaaatagagattccataa 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 271 tatatgagtttaagagccaaagtaaacagtcgagattccagctaaatagagattccatga 212
Query: 241 tacagatctta 251
|||||||||||
Sbjct: 211 tacagatctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space: 158025
Effective search space used: 158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no442_l04.g1 MSMg01no442_l04.g1 CHROMAT_FILE:
MSMg01no442_l04.g1 PHD_FILE: MSMg01no442_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:59 2005
(240 letters)
>mm_chr4_69901634_69902273
Length = 640
Score = 408 bits (211), Expect = e-118
Identities = 236/251 (94%), Gaps = 11/251 (4%)
Strand = Plus / Plus
Query: 1 actgggaggcaaaggcaggtagatctctgagttagaggccagcctagtctacagagtgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 actgggaggcaaaggcaggtagatctctgagttagaggccagcctagtctacagagtgag 249
Query: 61 tttcaagacagccaacgctatagaaagaaaccatctatccaaaaaacaaaaac------- 113
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaagacagccaaggctatagaaagaaaccatctatccaaaaaacaaaaacaaaacaa 309
Query: 114 ----caaggcaagacaatgaaaaggctctgtggactgggtgagctgtggggaaaagaaaa 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaaccaaggcaagacaatgaaaaggctctgtggactgggtgagctgtggggaaaagaaaa 369
Query: 170 cagataatcagagcaacagtgaaagcaacacacagtgcgggaagccaaactccactgctg 229
||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 370 cagataagcagagcaacagtgaaagcagcacacagtacgggaagccaaactccactgctg 429
Query: 230 gagaagccagt 240
|||||||||||
Sbjct: 430 gagaagccagt 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
