BAC Information

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BAC

Clone NameMSMg01-442N18
Chromosome4 (Build37)
Map Location 115,917,434 - 115,917,867
singlet/doubletsinglet
Overlap genePik3r3
Upstream geneLOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748
Downstream geneMast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442N18.T7 (MSMg01no442_n18.b1)MSMg01-442N18.TJ (MSMg01no442_n18.g1)
ACCAG532403AG532404
length818781
length of high quality
(start - end)
439 (66 - 504)441 (74 - 514)
definitionCHROMAT_FILE: MSMg01no442_n18.b1 PHD_FILE: MSMg01no442_n18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:14 2005CHROMAT_FILE: MSMg01no442_n18.g1 PHD_FILE: MSMg01no442_n18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCACTAGTTTACTCCCTGTTCTTTTGTCACTCCACTGTGGGGAAAAC
CCCAAAACCCTGTTTCTATTATTACTATGCCACAGCTTCTGAATTCTCCT
GAAGGAAATTACAACAGTTTAGAAAATCATGCCACTTCCAATTTATAGTT
TCTAATGGTAACTGAGATTACTATTTTGTTAGCAATTTATCCACATGCCT
CTAAGCAGTGACCTTTCCATCCCACAGAGTGGCCAATGGTCACTCTAATC
TGATCCCAGGAAGATATACTCCAATATCTCAAATGGATACCTAAAGCCAT
AGATAACATCTGAATCTAATAGAAACTATCTTCTCCTGTACATATATACC
TATGACAAAGTTAAACTTATAAACTAAATGTATGAGATTAAGAAAATACC
AAAATTATAATATACTGTTAATAAAAAGGTTTTATGAATGTGGCTTCCCT
TGGAATATCTTATTATGCTGTATCCCCCCTTCTCTAATGCTGTGCGATGA
CGGGACAACGCCTAAATGATGTGGTAAAGGGGGGTCAACCTAGAAAAGCT
TATTCTTTTCCGTGTTTTGCCTACCACATTTTCTCTTTCTTCTAACTTCC
TCTCCTCCATCATTTCTTTTTTTTACCCCCCTCTTTTTATTTTACCCTTC
TCCTTCTTCTCCTCCTCCCCCTTTCTGTTATAATCCATATATACCGTGTT
TCCCTACTTTTTATTCTTTATCTCCCTCTTATTTTACTTTCTTTCCCCTT
TTATTCTATTCCCGCTCT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGGCAGGGCTACACAGAGAAA
CCCTGTCTCGAANAACCAGAAAAAAAATTCAGTTTGCAAGGCCTTGGTAC
ATTCATCTAGCTTAAGAGAAGCTAAATAAAAAGGATTAAGTGGGGAAGGT
CTGGAGAGACATATGGTTCAGCGGTCAACAGCGCTGGCTGCTTTTACAGA
TAACCTAGGTGCAGTTCCCAGCACCTTCATGGCACCTCACAACTGTCTGA
GACAAACTCCACTTCCAAGATTTCCAATGCCCCTTTCTGGCCTCACTGAG
CACCATGCCTACATGGTACATAGGTATACATGTAGGCAAAACAACCATAC
ACATAAAATTAAAATAAAAAGGACTAAGGACTAGTCATTGTGGTTGAAGC
TGCTCACTGTATACTGATCTGTGTGAACATAGGTGAGAGTATATAGGACA
AGGGAGAGGGGTAGTCCTCGCCTGTTTTTGCTTACACTCTCTCCTTGTGT
CCCTATCATAAGGACTATATATTTTGATCCCAACTCCCTTATACCCCTTA
CCTCCTTTTGCTATTTCCCCTTCCTTTTTTGCTCTCTTCTCCATCCTCCT
TTCCCCCCTTCTTTTCTGTTTTTTTTATTATTCCCCCGCCCCCCACCTTT
TGCGACACGTGCTTTTTTCTTCTTCTCCCCCCTCTTTCCCTCTTGTTCAC
TTTTTCCCCCCCTCTTTCCTCTCTCCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_n18.b1 MSMg01no442_n18.b1 CHROMAT_FILE:
MSMg01no442_n18.b1 PHD_FILE: MSMg01no442_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:14 2005
         (439 letters)



>mm_chr4_115917434_115918272
          Length = 839

 Score =  801 bits (414), Expect = 0.0
 Identities = 429/434 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctgttcttttgtcactccactgtggggaaaaccccaaaaccctgtttctattattac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tccctgttcttttgtcactccactgtggggaaaaccccaaaaccctgtttctattattac 375

                                                                       
Query: 61  tatgccacagcttctgaattctcctgaaggaaattacaacagtttagaaaatcatgccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tatgccacagcttctgaattctcctgaaggaaattacaacagtttagaaaatcatgccac 315

                                                                       
Query: 121 ttccaatttatagtttctaatggtaactgagattactattttgttagcaatttatccaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttccaatttatagtttctaatggtaactgagattactattttgttagcaatttatccaca 255

                                                                       
Query: 181 tgcctctaagcagtgacctttccatcccacagagtggccaatggtcactctaatctgatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgcctctaagcagtgacctttccatcccacagagtggccaatggtcactctaatctgatc 195

                                                                       
Query: 241 ccaggaagatatactccaatatctcaaatggatacctaaagccatagataacatctgaat 300
           ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 194 ccaggaagatatactccaagatctcaaatgaatacctaaagccatagataacatctgaat 135

                                                                       
Query: 301 ctaatagaaactatcttctcctgtacatatatacctatgacaaagttaaacttataaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ctaatagaaactatcttctcctgtacatatatacctatgacaaagttaaacttataaact 75

                                                                       
Query: 361 aaatgtatgagattaagaaaataccaaaattataatatactgttaataaaaaggttttat 420
           |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 74  aaatgtatgagattaagaaaatacaaaaattacaatatactgttaataaaaaggttttat 15

                         
Query: 421 gaatgtggcttccc 434
           |||||||| |||||
Sbjct: 14  gaatgtggtttccc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)