BAC Information

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BAC

Clone NameMSMg01-443D06
Chromosome4 (Build37)
Map Location 50,077,733 - 50,077,910
singlet/doubletsinglet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
Downstream geneLOC100040979
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443D06.T7 (MSMg01no443_d06.b1)MSMg01-443D06.TJ (MSMg01no443_d06.g1)
ACCAG532666AG532667
length752736
length of high quality
(start - end)
202 (175 - 376)195 (124 - 318)
definitionCHROMAT_FILE: MSMg01no443_d06.b1 PHD_FILE: MSMg01no443_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:44 2005CHROMAT_FILE: MSMg01no443_d06.g1 PHD_FILE: MSMg01no443_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAACTCXXXXXXXXXXXXXXXXXXXXXXXXXXATATTTCCGACTCCGCG
GAATTCANGCTTTATAACAAGAATGGATTATGTTTTCATTGGTGAGTGTT
TCCAGAAAACTCTCTATCTCTTTATCGACATAGATTCTGGTGCTTTATTT
TCTTGCCTTGAGTATAATGTTTATCTATAACAATGACCAATGTGTCAATA
CTTTTTATGGTATCTTCTACACCTGAAATTCTCTCTTCTATTTCCTGTAT
TCTGTTGTTGATGCTTGAATCTGTAGCTCCTGCTCTCTTTTCTAAGTTTT
CCATCTCCAGGGTTGCCTCTCTTTTTTTTTTCTTTATTTTTCTATTTCCA
GCTTTGGTCCTTTGACCATATTGTTCAATTCCTTCCCCTGCTTGATTTTA
CTTTCCTGTATTTCTTTAAGGCATTTTTTTTCCTCTTTAAGGGCTTCTAC
CCGTTTACCTGTGTTTTCCTGCATTTCTTCAACATATTTCTCTATATCCT
CCTTTTAGTCCTCTACCATCCTTCATGAAATGGCATCTATTCCCCTTATC
CCGCTCCCTCTGGCATGTTTCCCTCATCCCCCATTCTATCTGCGCTATCC
TATAATTTATTTTCTTGTTCACGCCTTCACCCCCACCGGTTTCTCCCCTT
CCCTCTCCATTCATGCGTTTTGTTTTTTTAAACCATCCATTTCAATCTTC
CCCCGCCTCATTACGCTTATGAGTTGATTTCTCCTATTCCATCCCCCCCC
CN
TATACATGAATTGGTAGCCTGGCGGCGNCTGGNTTTTCAAAAAGGTGACC
TATAGAAGGAATGACAGAATCCAGGAACAGAACTGCACTGACTGCACGAA
CTGATCTCAACTGCATTCAACTCAACTGCATCAAACTGCATTGAACTAGA
CTCACCTGAACTCCACTGCATTGCCTAAACTTGGCTGAGCGCACTTATTG
CACTTCCCTCTGTCCTGACTCAGTCCATGCTGCTCTTTTATATTAGATAT
TAGTCCATAGCTCTCCTTTCCTCTCTGTTATCACTATAGTTGCGCATATT
TTATCTCCAACTCACTCTTTTTTATCCTTGCCTGATTTCTCTCTTTGTCT
GCCCCCACCCCCAATTATATGTAAGTTTTAAACATGGCTGCGTCCTTATA
CAACACAAATTTATCCCTATTGATTGATATAAACAATGCACACTAATGCT
ATGTCTGCATTTCACGCATAGGCATTACAGGTGTGTCCTTCCCCCTTTGA
TCCCCCCACCACATATCTATAACGTCTTTCTTTGCCTCCCTTCGACAGAC
CATTTATTGTTGCTGCTCCCCCCTCTTTTTCATTTTTTCCCATCCACCGC
CGCCCCACCTAATACCTCCCCCCTCTCTTTGTTTCCACACTATACTCAAA
AAATTTCCATTTTCCTCTCCCCCTTTTCTCGCGTTTTATTTACTCTTTTC
AATTCCCCACCTTTTTCCCCCACTAAATTTCAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_d06.g1 MSMg01no443_d06.g1 CHROMAT_FILE:
MSMg01no443_d06.g1 PHD_FILE: MSMg01no443_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:44 2005
         (195 letters)



>mm_chr4_50077533_50078127
          Length = 595

 Score =  253 bits (131), Expect = 4e-72
 Identities = 172/195 (88%), Gaps = 17/195 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactgcatcaaactgcattgaactagactcacctgaactccactgcattgcctaaacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactgcatcaaactgcattgaactagactcacctgaactccactgcattgcctaaacttg 260

                                                                       
Query: 61  gctgagcgcacttattgcacttccctctgtcctgactcagtccatgctgctcttttatat 120
           ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||  | | 
Sbjct: 261 gctgaacgcacttattgaacttccctctgtcctgactcagtccatgctgctctt--a-a- 316

                                                                       
Query: 121 tagatattagtccatagctctcctttcctctctgttatcactatagttgcgcatatttta 180
                        ||||||||||| ||||||||||| |||||||| ||||||||||| ||
Sbjct: 317 -------------atagctctcctctcctctctgttctcactataattgcgcatattcta 363

                          
Query: 181 tctccaactcactct 195
           |||||||||||||||
Sbjct: 364 tctccaactcactct 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)