BAC Information

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BAC

Clone NameMSMg01-444A16
Chromosome4 (Build37)
Map Location 71,743,059 - 71,743,507
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039979, LOC667638, EG667649
Downstream geneTle1, Aldoa-ps2, EG384113, LOC667713, LOC100039698
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444A16.T7 (MSMg01no444_a16.b1)MSMg01-444A16.TJ (MSMg01no444_a16.g1)
ACCAG533303AG533304
length7601,198
length of high quality
(start - end)
454 (47 - 500)---
definitionCHROMAT_FILE: MSMg01no444_a16.b1 PHD_FILE: MSMg01no444_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:49 2005CHROMAT_FILE: MSMg01no444_a16.g1 PHD_FILE: MSMg01no444_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGAAGTGTACTTGAGGTGAATGAGCTGTTTCTTTTTGTGATTCT
GAGAGAGATTCGGAAGCATTGGCTGCTTCAATGCTCAGTCCCAGGAATTT
GATCTTGGGTGTTTGTGCAGACAGAGGAGGTTGATGAACCTGTTTTGCCA
CACCAGGACACAAGGAAAGCCCCATTCCTTAATCCTCCTAGTCCCAAGAC
TTTCTTACTTTTCTTTTTCTGTTTTAAGGGTTTTCCCATTTTTATCAACT
GAAGTCATCCACTTAGACAAACAAGCATGCTCTATTCTGGGACCAATAAT
CTCCTCTTAAAAGCTATTTCTCTCTTCATTCAGCAGCTATTTAGCAAACA
ATCCCAGCCTTTAAACAAAGATAAGTAAGGTCATACCTTTCCTTGGGGAG
GGACGCATGCTAATATTAAAAACTGCAGGCCGCACAGCAAGCTGAAATGC
AATGCGCACCTTGTGGCAAATACTCACTTGCTTCTATTATGACGAGTTTC
CCTATTTTCCCCAGAGTCTTGATGTTTCGGGCACAGCCCACATCTAGGTG
TTTCTATAACCTAGTCCCCACCTGCTCCTCTAATATACTTATTCCGATCA
CTCCCCCAAAGCTTATGACACTATGTGTTGCCCCCTTTTCTTATTCCTAC
ACTGGGCCCGTTCTGTCTCTCCTTTCCCGAAGAATTTCCTCTTACTTCTT
GCGGCCAGCT
CACCAAGTCCTATATCATNATGTTCTTGGGTGTGCCGTGGGGATCTCACA
ACAAGAAGAGTTAGAAACATGTGTGTAATATCATTCTTAGGATCACGGGG
AGGTGCGCGCGGACGTGCCGGCGACACACGCTGTTGTCAGTGGCGCTCGT
CGAGCGTGTGCTAATTCAGTACAACATAAGCACAACAGCCAATAATGAGA
GTGATTAGCAATTATTCATTATTCTATCCTACCAGCCACGACGAAGACAG
AGCTCCGACGCGATGTAGCACGGAGGTAGCATATCGCGGCAGGATCCAGT
ATCGAGCCCGCTCGCGTTTGGTTTCTCGTCTATTCGCGCCCTTTACCTCT
CCGTCTTATATTTTATCCCCCCGAATACAAGATCGATGTAATTACGCCCT
AACAACTGCATAATCGTGTTGGACATGTCTGACGTCTGTTGTTATGTAGT
GCGGTCACGTGCTCGTTCATACGAAGGTTAGACGAGGAGGCGCTTATTCA
ATTCCATACCGGACACTCGTAATCCATCAGATAGTCGATTAATGATTGGG
CGGCGAAAGTGAGAGTGGAGCGAACGCGAGCGTATAGACGTGAATCGACG
ACACAACTAAAGAGTGGATCGAACATAGTAGCTGAGGCCAGANCATATAT
GCCGTTGTTGATATATATATATACGAGAGACGAGTAGAAGAATGACACGA
GTAACTCCGTGTACGTGATAGATGTGTACTCATAGGCGTTAGATAGTTCG
AGTGGCGTATAGAGATATGGAGGGACGAAGATGGAGGCTAAGACCGATGG
TAGTTGTGAGTGAATGGATAAAGCATACGAGTGACCAAGCTGGCGTATTA
TCTGATACAAGATGAATACACATGTCGTCGCAGGATGGAGCGCGCATATC
ATGTATAAGCGATGTAGTGAGCTCGGAGTGAGTATCGTGTAATGCGCGAA
CTACTAATATGTAATCATGCGATAGATTATAACAAGTGAGATGACCNGAT
CCAACGGATNAGTAGAGGTTAGTGTCGGTGCGTGGTAGACGTACCGATAG
TAAGAGATAACGAAGCCTAACAACATATTAATAGCACCGCAGGCGCGAGA
CGCAGCNCGCGCACGATAGACACGCGGGACAGACTACGTACCGATATGCG
GTAAGATACGGGCGCCTCAGACGAGATATGTCTGAGGATGATGTGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_a16.b1 MSMg01no444_a16.b1 CHROMAT_FILE:
MSMg01no444_a16.b1 PHD_FILE: MSMg01no444_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:49 2005
         (454 letters)



>mm_chr4_71742855_71743707
          Length = 853

 Score =  801 bits (414), Expect = 0.0
 Identities = 441/450 (98%), Gaps = 1/450 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgaagtgtacttgaggtgaatgagctgtttctttttgtgattctgagagagatt 64
           ||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 653 gaattctgaagtgaacttgaggtgaatgagctgtttc-tttggtgattctgagagagatt 595

                                                                       
Query: 65  cggaagcattggctgcttcaatgctcagtcccaggaatttgatcttgggtgtttgtgcag 124
           | |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 cagaagtatcggctgcttcaatgctcagtcccaggaatttgatcttgggtgtttgtgcag 535

                                                                       
Query: 125 acagaggaggttgatgaacctgttttgccacaccaggacacaaggaaagccccattcctt 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 534 acagaggaggttgatgaacctgttttgcaacaccaggacacaaggaaagccccattcctt 475

                                                                       
Query: 185 aatcctcctagtcccaagactttcttacttttctttttctgttttaagggttttcccatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aatcctcctagtcccaagactttcttacttttctttttctgttttaagggttttcccatt 415

                                                                       
Query: 245 tttatcaactgaagtcatccacttagacaaacaagcatgctctattctgggaccaataat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tttatcaactgaagtcatccacttagacaaacaagcatgctctattctgggaccaataat 355

                                                                       
Query: 305 ctcctcttaaaagctatttctctcttcattcagcagctatttagcaaacaatcccagcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctcctcttaaaagctatttctctcttcattcagcagctatttagcaaacaatcccagcct 295

                                                                       
Query: 365 ttaaacaaagataagtaaggtcatacctttccttggggagggacgcatgctaatattaaa 424
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 294 ttaaacaaagataagtaaggtcatacctttccttggggagggaagcatgctaatattaaa 235

                                         
Query: 425 aactgcaggccgcacagcaagctgaaatgc 454
           |||||||||| |||||||||||||||||||
Sbjct: 234 aactgcaggcagcacagcaagctgaaatgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 853
Length adjustment: 10
Effective length of query: 444
Effective length of database: 843
Effective search space:   374292
Effective search space used:   374292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)