BAC Information

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BAC

Clone NameMSMg01-444F02
Chromosome4 (Build37)
Map Location 102,202,552 - 102,354,437
singlet/doubletdoublet
Overlap genePde4b
Upstream geneLOC669460, Dnajc6, Leprot, Lepr, B020004J07Rik, LOC665362, C130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536, LOC433739
Downstream geneSgip1, Tctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444F02.T7 (MSMg01no444_f02.b1)MSMg01-444F02.TJ (MSMg01no444_f02.g1)
ACCAG533513AG533514
length736737
length of high quality
(start - end)
240 (76 - 315)590 (83 - 672)
definitionCHROMAT_FILE: MSMg01no444_f02.b1 PHD_FILE: MSMg01no444_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:11 2005CHROMAT_FILE: MSMg01no444_f02.g1 PHD_FILE: MSMg01no444_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,202,552 - 102,202,791)(102,353,848 - 102,354,437)
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAGAACCGCG
GAATTCAAGCCCAAATTCCCCTGATTTGCTATGCACTCAGCAAATCACCC
TTCATTGAACTGATGCAATTGATGCCGTTGGAAGGTGTGGGTTGATTTCA
ATTCCAGGAGTAATGATGGGGTCCACTACCATTCTTGCCCTTAGTATATG
CTCACAGATCTGCTTAGCCACAGAGAACCTTCTACATTGCATACCCCCAT
GACCCCCATTACCCCCCAACGCCCTACTCCTACCTACCACTCAGCTGGGG
AAAACTGTAACATCCTTGAAAGATTTATTTTTAGTCAGCTACAGAACCAT
CCAGAGGGTATTATCATTGGACTGGCTGCTTTTGAGTTTCATACTTACAT
GAGGTCTAAGCTAGACACTATCTGGTCAACCTTGCAGGCCTTCTCTCAGG
GGCAAGGTCCTTTCTCGATCTAGCATTTACTACCTTCGTTCTGCAATGCC
AAGATATCATGGGTATGGAAGGATGCAAAATCTCTCCTTAGTACGGAATA
CTTTCTTCTGACAGCGTTGATGTCTATAACATTTCATGAATTTGTGCTTT
TGTGAGCGACCAACCTGAATTTTTTCCGAACATTTTTCTCTTGTATTTTC
CCCACACTTCGGAGTTTTACCTTCTCTTGCCCTCTTTTTTTTGTTAGATA
TAATAAGCTTGACCTCTAGCAATGAGGTTGAATATG
TTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGATTTCTGGTTAAG
TTATGAGAGTTTCCTGAGCATTCTGGAGCACTGGAGAATTATACTCAGAA
AATCTGTCTTTATTGTGCTGGGAACCCAGTGACCTAATCAATTTGGACTG
CATTCATGGAAATGTGTGATTCAGTTGAAAGCAGACTACCAGTGGAGTAA
CAAGTCCTGTTCTTGGTGCTATATGCCAACAGAAGCACTGAAAATAGGGT
ATAAAACAAGTAAACCCAGGGTGATTCTGGAAAGAGAGTTTCACAATTGA
GAGAATGCTGCATCTTTCCTCCTGAAAAATGAAGACTCAGGTTTGGGAAA
GATAAGAGAACTTGAAGGCAGAGGTACCACAAAGAACCAGCTCCTGGCTT
TGTTTCTAAAGGCTGCGTAAAGAACTTCTGGGAGCCTTGTGAGGGAGCTA
ATATCGGAAAACAAATAAAGAATTCTTCATTGGTCCAAAGAGCATCCCTA
CAAAACATTATTTTCTCCAGACTGAGACATTTCAGATGAATTTGGAATGC
CCTTCCATGACATGTGCAGAAGTGACGAGAGGAAGTCAACTTGCTTTCAG
GACAAAGAAGTCAGATGGTCACAGCTGAGTATGTTGATGACTGCTAGAAG
CTCCAGGCAGAATATTGACCACATATTCTTCTTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_f02.b1 MSMg01no444_f02.b1 CHROMAT_FILE:
MSMg01no444_f02.b1 PHD_FILE: MSMg01no444_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:11 2005
         (240 letters)



>mm_chr4_102202352_102202991
          Length = 640

 Score =  433 bits (224), Expect = e-126
 Identities = 236/240 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgctatgcactcagcaaatcacccttcattgaactgatgcaattgatgccgttggaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgctatgcactcagcaaatcacccttcattgaactgatgcaattgatgccgttggaagg 260

                                                                       
Query: 61  tgtgggttgatttcaattccaggagtaatgatggggtccactaccattcttgcccttagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgggttgatttcaattccaggagtaatgatggggtccactaccattcttgcccttagt 320

                                                                       
Query: 121 atatgctcacagatctgcttagccacagagaaccttctacattgcatacccccatgaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatgctcacagatctgcttagccacagagaaccttctacattgcatacccccatgaccc 380

                                                                       
Query: 181 ccattaccccccaacgccctactcctacctaccactcagctggggaaaactgtaacatcc 240
           ||| ||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 ccactaccccccaacaccccactcctacctaccactcagcaggggaaaactgtaacatcc 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no444_f02.g1 MSMg01no444_f02.g1 CHROMAT_FILE:
MSMg01no444_f02.g1 PHD_FILE: MSMg01no444_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:11 2005
         (590 letters)



>mm_chr4_102353648_102354637
          Length = 990

 Score = 1125 bits (582), Expect = 0.0
 Identities = 588/590 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggatttctggttaagttatgagagtttcctgagcattctggagcactggagaattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 caaggatttctggttaagttatgagagtttcctgagcattctggagcactggagaattat 731

                                                                       
Query: 61  actcagaaaatctgtctttattgtgctgggaacccagtgacctaatcaatttggactgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 actcagaaaatctgtctttattgtgctgggaacccagtgacctaatcaatttggactgca 671

                                                                       
Query: 121 ttcatggaaatgtgtgattcagttgaaagcagactaccagtggagtaacaagtcctgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ttcatggaaatgtgtgattcagttgaaagcagactaccagtggagtaacaagtcctgttc 611

                                                                       
Query: 181 ttggtgctatatgccaacagaagcactgaaaatagggtataaaacaagtaaacccagggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttggtgctatatgccaacagaagcactgaaaatagggtataaaacaagtaaacccagggt 551

                                                                       
Query: 241 gattctggaaagagagtttcacaattgagagaatgctgcatctttcctcctgaaaaatga 300
           ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 550 gatcctggaaagagagtttcacgattgagagaatgctgcatctttcctcctgaaaaatga 491

                                                                       
Query: 301 agactcaggtttgggaaagataagagaacttgaaggcagaggtaccacaaagaaccagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agactcaggtttgggaaagataagagaacttgaaggcagaggtaccacaaagaaccagct 431

                                                                       
Query: 361 cctggctttgtttctaaaggctgcgtaaagaacttctgggagccttgtgagggagctaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cctggctttgtttctaaaggctgcgtaaagaacttctgggagccttgtgagggagctaat 371

                                                                       
Query: 421 atcggaaaacaaataaagaattcttcattggtccaaagagcatccctacaaaacattatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atcggaaaacaaataaagaattcttcattggtccaaagagcatccctacaaaacattatt 311

                                                                       
Query: 481 ttctccagactgagacatttcagatgaatttggaatgcccttccatgacatgtgcagaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttctccagactgagacatttcagatgaatttggaatgcccttccatgacatgtgcagaag 251

                                                             
Query: 541 tgacgagaggaagtcaacttgctttcaggacaaagaagtcagatggtcac 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tgacgagaggaagtcaacttgctttcaggacaaagaagtcagatggtcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)