BAC Information

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BAC

Clone NameMSMg01-445E15
Chromosome4 (Build37)
Map Location 110,336,165 - 110,509,715
singlet/doubletdoublet
Overlap genenone
Upstream geneCdkn2c, LOC100040307, Faf1, Dmrta2, Elavl4
Downstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445E15.T7 (MSMg01no445_e15.b1)MSMg01-445E15.TJ (MSMg01no445_e15.g1)
ACCAG534255AG534256
length747768
length of high quality
(start - end)		241 (61 - 301)420 (67 - 486)
definitionCHROMAT_FILE: MSMg01no445_e15.b1 PHD_FILE: MSMg01no445_e15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:26 2005CHROMAT_FILE: MSMg01no445_e15.g1 PHD_FILE: MSMg01no445_e15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,336,165 - 110,336,405)(110,509,349 - 110,509,715)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATCCGCGGAATTCCCATCT
TCTCCCTGGACTTGAACCAATCAAAATGCATTTGCCTTCTCTGATATATT
TATGAAACTATGGGTATAACCTTTTAGCTTTTCATCTTGACAAATACTGT
GAAGACCTTTACTGCAGTATTGTATTTGTTAAGTTTCACTATACTTTCTC
ATATTTCTTGGTCTAAATTTCCCATGGTTCTCATAATGTCTCAGCTGCAT
GGCTGTCATAGCAGCAGGTCATTTTTTATATGAAATCTTGCTACTGTCCT
CNCATTTGTCAGAATGTATGCACAGTTTCAAGGGAGAAGACTTGTCTAGA
CTCTTCTTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCTTCTTCCTCCT
CCTCCTCCTCTACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTTGCTGCATCTCTGGCTAGAGCCTTC
TTCCCATCAATTGTCTTGGAGTACCAACTGTTTTTGTGATAATTGTCCTT
AACCTTTTCTTCATATTTTCCTGTAAATTTTGGCTTATTCCACCCTCTAG
GTTTCTGTAATTGCCCCCCCTCTTTTTTTTTTTTTCTTTTTTTATCACTT
ATTCAATCTTCTTTATTTTTCCCATGTCTTTACCATTTATTCTCCCTTTT
TCCCCCCATTCCCCTATTTCCCTTTTCTACTTCACCTTTTCATTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATTGTGTACATGAACCATATTTTCATTATCCAT
TCACCAGCTAAAGGACAACTAGGTTGCTTCCATTTCCTATCTATTGTGAT
AAAAATCAATGGACATCTTTGAGTATCTGTGGAGTAGGACTTGGATCATT
TGGAAATATGCCAAGGAATGATATAACTGTGTTATATGGTAGATTTATTT
TTAGCCTTTTGAGAATTCTCCAGACTCATTTTTCAGAGAGGCAATGCCAG
TTTGCAGTTACTTCAACAGCAACGATGTATTTCCTCAGAGTTCAATGATT
AAGAGTCATGGCCCCAAGACAGAACTCTCTTCCTGGCTTCTAGATAGCTT
CCTTTTTATCTTCACTACTTTCTCATGTACGTTTTTCCTTGCAAGTCTGC
CAAACTACAACTGATTGTTTCACTTCTTTCATAGATCAAGGTACCATGCT
ACACTCCGCAGACAANAGAAGCTAAACAGGAAGAAAGACACCATCAAGGA
AGCTTGGATCCCACTTAAAAGGGAAAATAAAATAGCCTTAAAAAGCAAAT
AAAAGGGAGGGAACTTAAAGTAAAGGGGGGTGGTGTAATTTCTCCTTCTC
CTCCCTCAATCCTTTTACCGTTGCCACGACATCTTTTGTTATATATGCGA
CCTCTTTCCGCCATCCATTATTTTCCATCCCATTTATTTTTTCCATTTTT
TTTCCCCCCATTACCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_e15.b1 MSMg01no445_e15.b1 CHROMAT_FILE:
MSMg01no445_e15.b1 PHD_FILE: MSMg01no445_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:26 2005
         (241 letters)



>mm_chr4_110335965_110336605
          Length = 641

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgaaccaatcaaaatgcatttgccttctctgatatatttatgaaactatgggtataac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgaaccaatcaaaatgcatttgccttctctgatatatttatgaaactatgggtataac 260

                                                                       
Query: 61  cttttagcttttcatcttgacaaatactgtgaagacctttactgcagtattgtatttgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttagcttttcatcttgacaaatactgtgaagacctttactgcagtattgtatttgtt 320

                                                                       
Query: 121 aagtttcactatactttctcatatttcttggtctaaatttcccatggttctcataatgtc 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||
Sbjct: 321 aagtttcactatactttctcatatttcttggtctgaatttcccatggttctcagaaggtc 380

                                                                       
Query: 181 tcagctgcatggctgtcatagcagcaggtcattttttatatgaaatcttgctactgtcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagctgcatggctgtcatagcagcaggtcattttttatatgaaatcttgctactgtcct 440

            
Query: 241 c 241
           |
Sbjct: 441 c 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no445_e15.g1 MSMg01no445_e15.g1 CHROMAT_FILE:
MSMg01no445_e15.g1 PHD_FILE: MSMg01no445_e15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:26 2005
         (420 letters)



>mm_chr4_110508896_110509715
          Length = 820

 Score =  671 bits (347), Expect = 0.0
 Identities = 362/367 (98%)
 Strand = Plus / Minus

                                                                       
Query: 11  atgaaccatattttcattatccattcaccagctaaaggacaactaggttgcttccatttc 70
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 820 atgaaccatattttcattatctattcaccagctaaaggacaactaggttgcttccatttc 761

                                                                       
Query: 71  ctatctattgtgataaaaatcaatggacatctttgagtatctgtggagtaggacttggat 130
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 760 ctatctattgtgataaaaatcaatggacatagttgagtatctgtggagtaggacttggat 701

                                                                       
Query: 131 catttggaaatatgccaaggaatgatataactgtgttatatggtagatttatttttagcc 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 catttggaaatatgccaaggaatgatataactgtgttatatggtagatttatttttagcc 641

                                                                       
Query: 191 ttttgagaattctccagactcatttttcagagaggcaatgccagtttgcagttacttcaa 250
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 640 ttttgagaattctccacactcatttttcagagaggcaatgccagtttgcagttacatcaa 581

                                                                       
Query: 251 cagcaacgatgtatttcctcagagttcaatgattaagagtcatggccccaagacagaact 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 cagcaacgatgtatttcctcagagttcaatgattaagagtcatggccccaagacagaact 521

                                                                       
Query: 311 ctcttcctggcttctagatagcttcctttttatcttcactactttctcatgtacgttttt 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ctcttcctggcttctagatagcttcctttttatcttcactactttctcatgtacgttttt 461

                  
Query: 371 ccttgca 377
           |||||||
Sbjct: 460 ccttgca 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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