BAC Information

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BAC

Clone NameMSMg01-445I07
Chromosome4 (Build37)
Map Location 12,571,458 - 12,571,761
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461, LOC100039988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445I07.T7 (MSMg01no445_i07.b1)MSMg01-445I07.TJ (MSMg01no445_i07.g1)
ACCAG534430AG534431
length7301,043
length of high quality
(start - end)
307 (320 - 626)---
definitionCHROMAT_FILE: MSMg01no445_i07.b1 PHD_FILE: MSMg01no445_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:45 2005CHROMAT_FILE: MSMg01no445_i07.g1 PHD_FILE: MSMg01no445_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCGCGGAATTCTT
GCTTTTGTCTNAATATTGTTTAGGGATAATTTGTTTGGTAGTTGTATTTC
CTGATGACCAGTGACCTCCCTAAATGTTCTGGAGTTCTATGGAGCATTAA
ACGTCTAAATACACATCAAAGTTCTGATGTAATCAGTGCCATGGCCCATG
TGTCTAACAGTAGCTTTCCTCTCAGGTAGTTAAAATATCCCATTAGTTCA
GGAATGTCACAGGAATATCTGGGAACCATGAAGAATGTCATGGATCTGAG
CATGAAATTTGNTTTCTATATACATGTGTTTTTTATCCTATGCTGGATGA
ATCCAGTACTATTTTCTCTTACAAATTGGCTGTAGTTTACAGTTCACTGT
ACATTCCATCCACAAGGAAAAGAGTGGGGGACAAAAACCAACATTGCAAT
GCTACAGAGCTCCTGGGTATTCAGGCTAGAGGACACACACTCCCCAAGGT
CTAGCAGTTGATCGTTCTCAGTGAGGGACTTTGGATTCTCATTTTCCTAC
ATACCTGCCCTGCCCTTTAACCTTCTCACTTACATACATTTCCACTAGAA
AGAATAATTGTCAATACCCAAACTAAATAAAATAGTTTATTTTTTGATGC
GCCTTTAAGGAGGAAGCATGAATCATAGTGGAACCTTCCGTACATGACTT
CATTTGCCTATGCTTTTTTTTCTAAGTTTG
CCTCTTCCCCTTTCTATTGTTTCCCCCTTCTTTCCTCCCTTCGTCGAGTC
AGCCGATTATTCCTCCCTCTCCTCTCTTACTGCCCTCCAGCTCCATGCCC
GATAACCCCCGCGAACTTAACAAAAAACAAAAACATAAATAACCCATATT
TTCTATCCTCTAACCCTCAACTATACCGTACCACATCCTTCATTTTTGCC
ACGCCGGAGCAGTACACCAGTTTATCACGCCCTATTAATATATAACGTTC
CCCCCCGCGTTATTAGAAGATATGTAAAACTAATTAGACCAGAATCAGCT
CGCCGTGCCGGTTGTTCATGTTGGCATATGTGTTGAGTGTCAGAAGCTTT
TACTGATGTTATTATTTTAGGCGCAGAATAATTGTCGATGTCTCTGATCT
TTGCTCTTCGGTTTGTCGAAGTTATTGAGCCACGTACCGCGCTGAGGACC
ATGGCCAACCGCGACCGAACGGCGAATCTAACGGAATTTACCCACCTCGC
TTACCGATGTTGTTTATATATCTCCCTCCTCACTGTACGATCCTCCGTTA
TTACCTAACCAACATATTATCCCACTAGTTAGTATGTCTCTCTTATGATT
GCTATATATTGCCCTATTAACCTGTTTTCTTAATGTTACCAGCTATTATA
CTAAACCCACTCTACTTCTCTCCTATTTTGTTTTAGCGTTAGTACCCATA
TATTTATCCCTAATCTATTTTCTATCTTATCTCTCCCTCACAATTGTTCT
ATATAAGACTCCACCACCCCATAACCCCTATACTTGTTTATATTCTATCA
TACCCATGTACGTATATTACTTTACCTACGCCTCTTGTCTTTCCTGTTCC
CCCCATTGATTACGCACTGCCGTATTTTCTCTATTCACTCCTATATTTCA
ACACCATAATCCTAAATCTATATAGCGCCGATTACTCACCACCCTCATTC
CCTCTCTCCTTACCTGCTTATGCTTCATCCACCACCACCATTCTCTTCTA
TTATTCATCTATACATATACGAATACCGACTGATAGCACCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_i07.b1 MSMg01no445_i07.b1 CHROMAT_FILE:
MSMg01no445_i07.b1 PHD_FILE: MSMg01no445_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:45 2005
         (307 letters)



>mm_chr4_12571255_12571961
          Length = 707

 Score =  557 bits (288), Expect = e-163
 Identities = 300/304 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   catgtgttttttatcctatgctggatgaatccagtactattttctcttacaaattggctg 63
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 507 catgtgttttttatcctatgctgaatgaatccagtactattttctcttacaaattggctg 448

                                                                       
Query: 64  tagtttacagttcactgtacattccatccacaaggaaaagagtgggggacaaaaaccaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tagtttacagttcactgtacattccatccacaaggaaaagagtgggggacaaaaaccaac 388

                                                                       
Query: 124 attgcaatgctacagagctcctgggtattcaggctagaggacacacactccccaaggtct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 attgcaatgctacagagctcctgggtattcaggctagaggacacacactccccaaggtct 328

                                                                       
Query: 184 agcagttgatcgttctcagtgagggactttggattctcattttcctacatacctgccctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agcagttgatcgttctcagtgagggactttggattctcattttcctacatacctgccctg 268

                                                                       
Query: 244 ccctttaaccttctcacttacatacatttccactagaaagaataattgtcaatacccaaa 303
           |||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||
Sbjct: 267 ccctttaaccttctcacttacatacattcccactaaaaagaataagtgtcaatacccaaa 208

               
Query: 304 ctaa 307
           ||||
Sbjct: 207 ctaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)