Query= MSMg01no445_m04.b1 MSMg01no445_m04.b1 CHROMAT_FILE:
MSMg01no445_m04.b1 PHD_FILE: MSMg01no445_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:05 2005
(484 letters)
>mm_chr4_119078527_119079410
Length = 884
Score = 847 bits (438), Expect = 0.0
Identities = 471/482 (97%), Gaps = 4/482 (0%)
Strand = Plus / Plus
Query: 5 gaattccaggattgtcc-gggctgtacagagaaaccctgtctcgaaaaaccactggaaca 63
||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggacag-ccagggctatacagagaaaccctgtctcgaaaaaccactggaaca 263
Query: 64 ctggaactcactttgtagagcaggctggcctcgaactcagaagtccatctacctctgctt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctggaactcactttgtagagcaggctggcctcgaactcagaagtccatctacctctgctt 323
Query: 124 tccaagtgccgagattaaaggcgtgcgccaccaccgcccggcctcccagctcttctttgc 183
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tccaagtgtcgagattaaaggcgtgcgccaccaccgcccggcctcccagctcttctttgc 383
Query: 184 tcctgcttttgctgctgagcaaagccctggttcatttcctcatgactctccatctcctgc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcctgcttttgctgctgagcaaagccctggttcatttcctcatgactctccatctcctgc 443
Query: 244 gcctccctccacagccaaccagggctggagagtactggccagcaaggcttgatgtctagt 303
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 444 gcctccctccacagccaaccagggctggagagcactggccagcaaggcttgatgtctagt 503
Query: 304 gtctgcgcatgtcctgtgaagcctccctgcggcccagctgat-gcccatgcttccattct 362
|||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||
Sbjct: 504 gtctgcgcatgtcctgtgaagcctccctgcggcccagctg-tcgcccgtgcttccattct 562
Query: 363 ctgtagaattagaccgctgtctcacaccctctcctaattgtgcgccattatcctatcgtt 422
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 563 ctgtagaattagaccgctgtctcacactctctcctaattgtgcgccattatcctatcgtt 622
Query: 423 tgtacccctactgcacctcaggtctgtctgtgcttattttctagcacaaagcacaagaat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgtacccctactgcacctcaggtctgtctgtgcttattttctagcacaaagcacaagaat 682
Query: 483 tg 484
||
Sbjct: 683 tg 684
Score = 136 bits (70), Expect = 5e-36
Identities = 94/102 (92%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 64 ctggaactcactttgtagagcaggctggcctcgaactcagaagtccatctacctctgctt 123
|||||| ||||||||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct: 213 ctggaattcactttgtagagcaggctggcctcgaactcagaagtccgcctgcctctgcct 154
Query: 124 tccaagtgccgagattaaaggcgtgcgccaccaccgcccggc 165
||||||||||||||||||||||||||||||| ||||||||
Sbjct: 153 cccaagtgccgagattaaaggcgtgcgccacc-gcgcccggc 113
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no445_m04.g1 MSMg01no445_m04.g1 CHROMAT_FILE:
MSMg01no445_m04.g1 PHD_FILE: MSMg01no445_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:05 2005
(536 letters)
>mm_chr4_119250772_119251707
Length = 936
Score = 634 bits (328), Expect = 0.0
Identities = 435/536 (81%), Gaps = 99/536 (18%)
Strand = Plus / Minus
Query: 1 aaattcactacatagaccaagaccacactgacctcaaagtcacagaaatctacctgcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 aaattcactacatagaccaagaccacactgacctcaaagtcacagaaatctacctgcctc 825
Query: 61 caacctcccagtgctggaatcaaaggcatgttctgccacacccagctttggtccccatag 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 824 caacctcccagtgctggaatcaaaggcatgttctaccacacccagctttggtccccatag 765
Query: 121 aaatgttcaggtataaatgtttctaggtctacaaaaacgaaaattaaagtgataaggtaa 180
||||||||||||||||||||||||||||
Sbjct: 764 aaatgttcaggtataaatgtttctaggt-------------------------------- 737
Query: 181 atactaggcatctagtattttaaaattagtgaaaggaaaaaattttaatgattactattt 240
Sbjct: 737 ------------------------------------------------------------ 737
Query: 241 ataatccctaaagatactgaagttctgctggaggcaaatggtatcagaacctttctggga 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 -------ctaaagatactgaagttctgctggaggcaaatggtatcagaacctttctggga 684
Query: 301 atctttagttttaggaacaaaattctttcccactcgcttccactcccaatccacccacta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atctttagttttaggaacaaaattctttcccactcgcttccactcccaatccacccacta 624
Query: 361 tgtcttaatatattagccacgtatctttcaggtgagtatttaatcactatttctaaagga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgtcttaatatattagccacgtatctttcaggtgagtatttaatcactatttctaaagga 564
Query: 421 attccaagccatgatttgagataataatcaccaagacataacaacagatttacaatatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 attccaagccatgatttgagataataatcaccaagacataacaacagatttacaatatat 504
Query: 481 aagacactgaggactaggttgatgaggaacataatccaaatttatatatactgttc 536
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 503 aagacactgaggactaggttgatgaggaacataatcaaaatttatatatactgttc 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
