BAC Information

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BAC

Clone NameMSMg01-445P02
Chromosome4 (Build37)
Map Location 35,747,884 - 35,834,316
singlet/doubletdoublet
Overlap geneLingo2
Upstream geneZfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445P02.T7 (MSMg01no445_p02.b1)MSMg01-445P02.TJ (MSMg01no445_p02.g1)
ACCAG534754AG534755
length754766
length of high quality
(start - end)
456 (35 - 490)475 (64 - 538)
definitionCHROMAT_FILE: MSMg01no445_p02.b1 PHD_FILE: MSMg01no445_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:20 2005CHROMAT_FILE: MSMg01no445_p02.g1 PHD_FILE: MSMg01no445_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,747,884 - 35,748,336)(35,833,845 - 35,834,316)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGTGT
TAACTGCGTTATAAGACATTCCCGACAGACAGGTAAAGTCACTGAATATG
AGATCTTCTTTCTTGAACAACAATGATCACAAAAAGCTTGTAACAGGAAT
TACTGGAGACACAGATTCTTCTAATCACTTTACACATCAATTTACTTAAT
CCTTATGCAACGAGTCCCAATTTTACAGATATGTAAACTGAAGTTCAGTG
AAATTTGGTAACATTCCCAAGGTGTCTTCAGGGATGAAATGATTTAAACC
AGTGGTGCTCAACCTGTCAGTTGTTTCTTCTAAGGAGTTTGAATGTGGTC
ACATATCATATATTTTGCATACCATATATATTTACACTGAAATTCTTAAC
AGTGGTAAAATTACAGTTATGAAGTAGTAACATAAATAGTTTTATTGTTG
GGGGGTCACCACAACATGGAGAATTATATTAAAGGGTACAAGTATTACGA
ACATTGAAAACCACTGATTTCAACCCAGATATTTGGCTATAGGAGCTTTC
TGTCTTCTTCTTTCTGCTGGAGTTCCTGAGGGATGGTTCAGAAAATATGT
AATATTACCTATAAGTCTAAGAATCTGGGCCCAAGTCAGTCTACTGTACT
ACTTGTTATCCACACACCATCATTTGAAAACTTTCTTTTCCATCTGACCT
GTTTGATACCCTCCCCCATCTTTTCTCCTCCCACATATTTTCCCTTGTCT
CTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTAGGGGGAGAAGGGGGAAAAACTGGGTTTTTGAGGCA
TCTGGATTTCCTTTATTTGGTAATCTTTAGAAGAGATTTTATTTTTTCCT
CAAGTAAAACAATTTCTCGAAGATATATTTCAGAAGTGGTAGGGTATTTC
TCGGTGGAGCATTCTTATACAGACACATTTTACACTTTTTTTTCTGTCCT
ATTGTCCTGTGGCTGGCTGCTGGAAGACTCTGCTGATTCCATTTAGATTG
CCTATCTACTGGCTGCAGTAGCTCCAGGTACAAAAAGGACTAGGTCCTAT
TGTTCCTCAGAAGGTACCATGGGAATGCAACCAAACTCAACAAAGATTAC
GAATGCAGAAAGGAGCAAAGAGAATCAAAGATAACATATTTAAATTTTAA
AGAGTCTAAACCATTTGTAAGAGCAAGGAGAGGGACCATTTCAGGGTCAG
CCTCTATTGTGTGGCAGAAGGAAAACTGAAGCTATTCACCAGGATCCAAA
ATTTACTTAAAGTTTGGGTATAGGGGAGTCAACTTTGGAGAGTCTGTTTG
ATGCTGGAAACGTGTAACTGTCTTCGGCCTGCGAGGGATCCCCCCTTTTT
TTTTCCAAAGGGACTTTCTCCCGGATTTTTACCTCAATTGCCCCCACACT
GCCCCCTAGGCGGTGTATGGTTGTCCTCCCGTGTTCTTTATCCGCCGTTG
TTGATCTGCCCGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_p02.b1 MSMg01no445_p02.b1 CHROMAT_FILE:
MSMg01no445_p02.b1 PHD_FILE: MSMg01no445_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:20 2005
         (456 letters)



>mm_chr4_35747681_35748536
          Length = 856

 Score =  853 bits (441), Expect = 0.0
 Identities = 450/453 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagtgttaactgcgttataagacattcccgacagacaggtaaagtcactgaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagtgttaactgcgttataagacattcccgacagacaggtaaagtcactgaat 263

                                                                       
Query: 64  atgagatcttctttcttgaacaacaatgatcacaaaaagcttgtaacaggaattactgga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgagatcttctttcttgaacaacaatgatcacaaaaagcttgtaacaggaattactgga 323

                                                                       
Query: 124 gacacagattcttctaatcactttacacatcaatttacttaatccttatgcaacgagtcc 183
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacacagattcttctaatcactttacacatcaatttacttaatccttatgcaacgagtcc 383

                                                                       
Query: 184 caattttacagatatgtaaactgaagttcagtgaaatttggtaacattcccaaggtgtct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 384 caattttacagatatgtaaactgaagttcagtgaaatttggtaacattctcaaggtgtct 443

                                                                       
Query: 244 tcagggatgaaatgatttaaaccagtggtgctcaacctgtcagttgtttcttctaaggag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcagggatgaaatgatttaaaccagtggtgctcaacctgtcagttgtttcttctaaggag 503

                                                                       
Query: 304 tttgaatgtggtcacatatcatatattttgcataccatatatatttacactgaaattctt 363
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 504 tttgaatgtggtcacatatcatatattttgcatatcatatatatttacactgaaattctt 563

                                                                       
Query: 364 aacagtggtaaaattacagttatgaagtagtaacataaatagttttattgttggggggtc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aacagtggtaaaattacagttatgaagtagtaacataaatagttttattgttggggggtc 623

                                            
Query: 424 accacaacatggagaattatattaaagggtaca 456
           |||||||||||||||||||||||||||||||||
Sbjct: 624 accacaacatggagaattatattaaagggtaca 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no445_p02.g1 MSMg01no445_p02.g1 CHROMAT_FILE:
MSMg01no445_p02.g1 PHD_FILE: MSMg01no445_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:20 2005
         (475 letters)



>mm_chr4_35833642_35834516
          Length = 875

 Score =  882 bits (456), Expect = 0.0
 Identities = 468/472 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggggagaagggggaaaaactgggtttttgaggcatctggatttcctttatttggtaatct 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ggggagaagggggagaaactgggtttttgaggcatctggatttcctttatttggtaatct 616

                                                                       
Query: 64  ttagaagagattttattttttcctcaagtaaaacaatttctcgaagatatatttcagaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttagaagagattttattttttcctcaagtaaaacaatttctcgaagatatatttcagaag 556

                                                                       
Query: 124 tggtagggtatttctcggtggagcattcttatacagacacattttacacttttttttctg 183
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 555 tggtagggtatttctcggtggagcattcttacacagacacattttacacttttttttctg 496

                                                                       
Query: 184 tcctattgtcctgtggctggctgctggaagactctgctgattccatttagattgcctatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tcctattgtcctgtggctggctgctggaagactctgctgattccatttagattgcctatc 436

                                                                       
Query: 244 tactggctgcagtagctccaggtacaaaaaggactaggtcctattgttcctcagaaggta 303
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 435 tactggctgcagtagctccaggtacaaaaaggactaggtccttttgttcctcagaaggta 376

                                                                       
Query: 304 ccatgggaatgcaaccaaactcaacaaagattacgaatgcagaaaggagcaaagagaatc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ccatgggaatgcaaccaaactcaacaaagattacgaatgcagaaaggagcaaagagaatc 316

                                                                       
Query: 364 aaagataacatatttaaattttaaagagtctaaaccatttgtaagagcaaggagagggac 423
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 315 aaagataacatatttaaattttaaagaggctaaaccatttgtaagagcaaggagagggac 256

                                                               
Query: 424 catttcagggtcagcctctattgtgtggcagaaggaaaactgaagctattca 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 catttcagggtcagcctctattgtgtggcagaaggaaaactgaagctattca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)