Query= MSMg01no446_g12.b1 MSMg01no446_g12.b1 CHROMAT_FILE:
MSMg01no446_g12.b1 PHD_FILE: MSMg01no446_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:55 2005
(568 letters)
>mm_chr4_98063890_98064860
Length = 971
Score = 1048 bits (542), Expect = 0.0
Identities = 562/569 (98%), Gaps = 3/569 (0%)
Strand = Plus / Plus
Query: 1 tttttgagacagtccagtgtttcccagttcttacagggggcttaataattattcataggt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tttttgagacagtccagtgtttcccagttcttacagggggcttaataattattcgtaggt 260
Query: 61 caaacacccaagcagcctgaacttgcttgctttgttaaagttttaacaactttgcattag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaacacccaagcagcctgaacttgcttgctttgttaaagttttaacaactttgcattag 320
Query: 121 tttaagggaagtcaccaaaaggggttagttccttgaagtctttcctcgtattggtgggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaagggaagtcaccaaaaggggttagttccttgaagtctttcctcgtattggtgggag 380
Query: 181 tatgaaattccttgagaaagcaagctagtcagtctgcctt-atatttgaag-cacataac 238
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 381 catgaaattccttgagaaagcaagctagtcagtctgccttaatatttgaagtcacataac 440
Query: 239 cattgctactt-antttttttcttaagctgggatttttgtatagatttggatgtcttttg 297
||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 cattgctacttaattttttttcttaaactgggatttttgtatagatttggatgtcttttg 500
Query: 298 gagctcctactgtagattctgttgcaaatggaagggtgtgtagtgcttgcgttcatttgt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagctcctactgtagattctgttgcaaatggaagggtgtgtagtgcttgcgttcatttgt 560
Query: 358 atgtctttattggtgctgaggacagaaagccaggcccttgtggtgctgaggacctgctag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtctttattggtgctgaggacagaaagccaggcccttgtggtgctgaggacctgctag 620
Query: 418 agtttaagcataggccttggtccactcccgacctggagagtgatttgtgctggtcctcca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtttaagcataggccttggtccactcccgacctggagagtgatttgtgctggtcctcca 680
Query: 478 tttggaaacgatctgcctgagatttgaagaggctgaaaggaaacagttgtagaacttgtg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttggaaacgatctgcctgagatttgaagaggctgaaaggaaacagttgtagaacttgtg 740
Query: 538 ttgtctgtcacagcaagcagtcgttgtcc 566
|||||||||||||||||||||||||||||
Sbjct: 741 ttgtctgtcacagcaagcagtcgttgtcc 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 971
Length adjustment: 10
Effective length of query: 558
Effective length of database: 961
Effective search space: 536238
Effective search space used: 536238
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no446_g12.g1 MSMg01no446_g12.g1 CHROMAT_FILE:
MSMg01no446_g12.g1 PHD_FILE: MSMg01no446_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:55 2005
(608 letters)
>mm_chr4_98204635_98205649
Length = 1015
Score = 1106 bits (572), Expect = 0.0
Identities = 599/612 (97%), Gaps = 7/612 (1%)
Strand = Plus / Minus
Query: 1 aaaagcacagctttgaagggcacagcccttcccagaagaacacatccccttcccttaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 aaaagcacagctttgaagggcacagcccttcccagaagaacacatccccttcccttaaga 753
Query: 61 aaggaagccatgtacactctccttctaccatgaaactcagccctttgcatcgaggatcct 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 aaggaagccatgtacattctccttctaccatgaaactcagccctttgcatcgaggatcct 693
Query: 121 caaaataagcataaaggtaacaataaccccacgtaccaactttacaattattcaggtggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 caaaataagcataaaggtaacaataaccccacgtaccaactttacaattattcaggtggt 633
Query: 181 ttttattataagaattagagattattttataaaatctgaaataccagattttctaggtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ttttattataagaattagagattattttataaaatctgaaataccagattttctaggtgg 573
Query: 241 caaagtgttcttc-------tatagatagtcatacacatttaatgttaaaagggaagtgg 293
|||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 caaactgctcttctatagtttatagatagtcatacacatttaatgttaaaagggaagtgg 513
Query: 294 ttataatgaataattatttctgcataaaggtgctctgaatttatatagcaaataacatag 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttataatgaataattatttctgcataaaggtgctctgaatttatatagcaaataacatag 453
Query: 354 tttgaatcacaatatgtaattcttatagataattaaagtgaaacaaaattccattgttaa 413
||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 452 tttgaatcataatatgtaactcttacagataattaaagtgaaacaaaattccattgttaa 393
Query: 414 aattaccttcacagaatgaagatacattcttgaatgaaagaacaattgaaacatgccaaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aattaccttcacagaatgaagatacattcttgaatgaaagaacaattgaaacatgccaaa 333
Query: 474 gtttacagagacgccagctgctgcaggtaggagccgaggtgttcaaacccttcacaaaca 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gtttacagagacgccagctgctgcaggtaggagccgaggtgttcaaacccttcacaaaca 273
Query: 534 cccacatgactagattgggatttgtcttcctacaggacttcagtaaagtgagttcaatta 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cccacatgactagattgggatttgtcttcctacaggacttcagtaaagtgagttcaatta 213
Query: 594 tgctttatctga 605
||||||||||||
Sbjct: 212 tgctttatctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1015
Length adjustment: 10
Effective length of query: 598
Effective length of database: 1005
Effective search space: 600990
Effective search space used: 600990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
