MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-446L09
Chromosome	4 (Build37)
Map Location	134,212,599 - 134,213,051
singlet/doublet	singlet
Overlap gene	Man1c1
Upstream gene	Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1
Downstream gene	Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	Pigv (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230801 MGI:2442480
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Arid1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:93760 MGI:1935147
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rps6ka1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20111 MGI:104558
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930429E23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73898 MGI:1921148
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	LOC100042151 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042151
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 1 Protein

name	Hmgn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15331 MGI:96136
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dhdds (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67422 MGI:1914672
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lin28 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:83557 MGI:1890546
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aim1l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230806 MGI:1334463
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 14 ESTs, 5 Proteins

name	Cd52 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23833 MGI:1346088
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ubxd5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67586 MGI:1914836
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sh3bgrl3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73723 MGI:1920973
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc21 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70012 MGI:1917262
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG665186 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665186 MGI:3702974
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Catsper4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329954 MGI:3043288
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cnksr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:194231 MGI:2670958
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfp593 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68040 MGI:1915290
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Grrp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72690 MGI:1919940
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 11 ESTs, 2 Proteins

name	Pdik1l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230809 MGI:2385213
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trim63 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433766 MGI:2447992
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc30a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230810 MGI:106637
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Extl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56219 MGI:1888742
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC434166 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:434166
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Pafah2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100163 MGI:2140321
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Stmn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16765 MGI:96739
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Paqr7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71904 MGI:1919154
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2610002D18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69885 MGI:1917135
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2410166I05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76824 MGI:1924074
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sepn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74777 MGI:2151208
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Man1c1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230815 MGI:2446214
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ldlrap1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100017 MGI:2140175
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem57 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66146 MGI:1913396
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rhd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19746 MGI:1202882
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem50a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71817 MGI:1919067
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D4Wsu53e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27981 MGI:106498
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Syf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68592 MGI:1915842
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Runx3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12399 MGI:102672
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Clic4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:29876 MGI:1352754
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC676072 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:676072
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Srrm1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:51796 MGI:1858303
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A330049M08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230822 MGI:2444888
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665287 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665287
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Dscr1l2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53902 MGI:1858220
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Npal3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74552 MGI:1921802
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930555I21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78806 MGI:1926056
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Grhl3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230824 MGI:2655333
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700029M20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73937 MGI:1913597
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Pigv (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142350613 GeneID:230801 MGI:2442480
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol glycan anchor biosynthesis, class V transcript_id : NM_178698.4

name	Arid1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124249108 GeneID:93760 MGI:1935147
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : AT rich interactive domain 1A (Swi1 like) transcript_id : NM_001080819.1

name	Rps6ka1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803300 GeneID:20111 MGI:104558
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein S6 kinase polypeptide 1 transcript_id : NM_009097.2

name	4930429E23Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253144 GeneID:73898 MGI:1921148
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : RIKEN cDNA 4930429E23 gene transcript_id : XM_001474031.1

name	LOC100042151 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253167 GeneID:100042151
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 1 Protein product : hypothetical protein LOC100042151 transcript_id : XM_001478221.1

name	Hmgn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:86198321 GeneID:15331 MGI:96136
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : high mobility group nucleosomal binding domain 2 transcript_id : NM_016957.3

name	Dhdds (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381204 GeneID:67422 MGI:1914672
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dehydrodolichyl diphosphate synthase transcript_id : NM_026144.3

name	Lin28 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22003877 GeneID:83557 MGI:1890546
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lin-28 homolog (C. elegans) transcript_id : NM_145833.1

name	Aim1l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94372629 GeneID:230806 MGI:1334463
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 14 ESTs, 5 Proteins product : absent in melanoma 1-like, transcript variant 1 transcript_id : XM_131754.7

name	Cd52 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:14719423 GeneID:23833 MGI:1346088
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD52 antigen transcript_id : NM_013706.1

name	Ubxd5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129822 GeneID:67586 MGI:1914836
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UBX domain containing 5 transcript_id : NM_026257.2

name	Sh3bgrl3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:18017601 GeneID:73723 MGI:1920973
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SH3 domain binding glutamic acid-rich protein-like 3 transcript_id : NM_080559.1

name	Ccdc21 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31541891 GeneID:70012 MGI:1917262
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 21 transcript_id : NM_144527.2

name	EG665186 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:123959719 GeneID:665186 MGI:3702974
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG665186 transcript_id : NM_001080712.1

name	Catsper4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384331 GeneID:329954 MGI:3043288
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : channel, sperm associated 4 transcript_id : NM_177866.3

name	Cnksr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486673 GeneID:194231 MGI:2670958
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : connector enhancer of kinase suppressor of Ras 1 transcript_id : NM_001081047.1

name	Zfp593 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13195641 GeneID:68040 MGI:1915290
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 593 transcript_id : NM_024215.1

name	Grrp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253169 GeneID:72690 MGI:1919940
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 11 ESTs, 2 Proteins product : glycine/arginine rich protein 1 transcript_id : XM_485455.5

name	Pdik1l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254185 GeneID:230809 MGI:2385213
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PDLIM1 interacting kinase 1 like transcript_id : NM_146156.2

name	Trim63 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124244069 GeneID:433766 MGI:2447992
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif-containing 63 transcript_id : NM_001039048.2

name	Slc30a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89179311 GeneID:230810 MGI:106637
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 30 (zinc transporter), member 2 transcript_id : NM_001039677.1

name	Extl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9624985 GeneID:56219 MGI:1888742
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : exostoses (multiple)-like 1 transcript_id : NM_019578.1

name	LOC434166 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253171 GeneID:434166
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : similar to hypothetical protein MGC37588 transcript_id : XM_001478477.1

name	Pafah2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19527095 GeneID:100163 MGI:2140321
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : platelet-activating factor acetylhydrolase 2 transcript_id : NM_133880.1

name	Stmn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892615 GeneID:16765 MGI:96739
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : stathmin 1 transcript_id : NM_019641.3

name	Paqr7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388621 GeneID:71904 MGI:1919154
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : progestin and adipoQ receptor family member VII transcript_id : NM_027995.2

name	2610002D18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487373 GeneID:69885 MGI:1917135
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2610002D18 gene transcript_id : NM_001081099.1

name	2410166I05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892380 GeneID:76824 MGI:1924074
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2410166I05 gene transcript_id : NM_029759.3

name	Sepn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111118963 GeneID:74777 MGI:2151208
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : selenoprotein N, 1 transcript_id : NM_029100.2

name	Man1c1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131038 GeneID:230815 MGI:2446214
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mannosidase, alpha, class 1C, member 1 transcript_id : NM_207237.2

name	Ldlrap1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21704091 GeneID:100017 MGI:2140175
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : low density lipoprotein receptor adaptor protein 1 transcript_id : NM_145554.1

name	Tmem57 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365976 GeneID:66146 MGI:1913396
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 57 transcript_id : NM_025382.5

name	Rhd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982765 GeneID:19746 MGI:1202882
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rh blood group, D antigen transcript_id : NM_011270.2

name	Tmem50a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62990167 GeneID:71817 MGI:1919067
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 50A transcript_id : NM_027935.2

name	D4Wsu53e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560077 GeneID:27981 MGI:106498
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 4, Wayne State University 53, expressed transcript_id : NM_023665.2

name	Syf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803100 GeneID:68592 MGI:1915842
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SYF2 homolog, RNA splicing factor (S. cerevisiae) transcript_id : NM_026780.2

name	Runx3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84579890 GeneID:12399 MGI:102672
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : runt related transcription factor 3 transcript_id : NM_019732.2

name	Clic4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130925 GeneID:29876 MGI:1352754
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chloride intracellular channel 4 (mitochondrial) transcript_id : NM_013885.2

name	Srrm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142354391 GeneID:51796 MGI:1858303
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serine/arginine repetitive matrix 1 transcript_id : NM_016799.2

name	A330049M08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21704093 GeneID:230822 MGI:2444888
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A330049M08 gene transcript_id : NM_145555.1

name	Dscr1l2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802845 GeneID:53902 MGI:1858220
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Down syndrome critical region gene 1-like 2 transcript_id : NM_022980.4

name	Npal3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364504 GeneID:74552 MGI:1921802
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NIPA-like domain containing 3 transcript_id : NM_028995.3

name	4930555I21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801735 GeneID:78806 MGI:1926056
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930555I21 gene transcript_id : NM_030189.2

name	Grhl3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71480135 GeneID:230824 MGI:2655333
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : grainyhead-like 3 (Drosophila) transcript_id : NM_001013756.1

name	Pigv (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542474 CCDS:CCDS18755.1 GeneID:230801 MGI:2442480
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0006506 - GPI anchor biosynthesis [Evidence IEA] codon_start : 1 exception : mismatches in translation note : phosphatidylinositol glycan, class V product : phosphatidylinositol glycan class V protein_id : NP_848813.2

name	Arid1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249109 GeneID:93760 MGI:1935147
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0016514 - SWI/SNF complex [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0016568 - chromatin modification [Evidence IEA]; GO:0006325 - establishment and/or maintenance of chromatin architecture [Evidence IPI] codon_start : 1 note : SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily f, member 1; Swi1 like product : AT rich interactive domain 1A protein_id : NP_001074288.1

name	Rps6ka1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677811 CCDS:CCDS18758.1 GeneID:20111 MGI:104558
definition	GO_component : GO:0005819 - spindle [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007046 - ribosome biogenesis [Evidence IEA] codon_start : 1 function : phosphorylates S6 product : ribosomal protein S6 kinase polypeptide 1 protein_id : NP_033123.1

name	4930429E23Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253145 GeneID:73898 MGI:1921148
definition	codon_start : 1 product : hypothetical protein LOC73898 protein_id : XP_001474081.1

name	LOC100042151 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253168 GeneID:100042151
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478271.1

name	Hmgn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:8393534 CCDS:CCDS18759.1 GeneID:15331 MGI:96136
definition	GO_component : GO:0000785 - chromatin [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006323 - DNA packaging [Evidence IEA] codon_start : 1 note : high mobility group protein 17 product : high mobility group nucleosomal binding domain 2 protein_id : NP_058653.1

name	Dhdds (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27754093 CCDS:CCDS18760.1 GeneID:67422 MGI:1914672
definition	codon_start : 1 product : dehydrodolichyl diphosphate synthase protein_id : NP_080420.2

name	Lin28 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22003878 CCDS:CCDS18761.1 GeneID:83557 MGI:1890546
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : testis expressed gene 17 product : RNA-binding protein LIN-28 protein_id : NP_665832.1

name	Aim1l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82895232 GeneID:230806 MGI:1334463
definition	codon_start : 1 product : similar to absent in melanoma 1-like isoform 1 protein_id : XP_131754.6

name	Cd52 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14719424 GeneID:23833 MGI:1346088
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0048503 - GPI anchor binding [Evidence IEA] codon_start : 1 product : CD52 antigen protein_id : NP_038734.1

name	Ubxd5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385766 CCDS:CCDS18763.1 GeneID:67586 MGI:1914836
definition	codon_start : 1 product : socius protein_id : NP_080533.1

name	Sh3bgrl3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18017602 GeneID:73723 MGI:1920973
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 product : SH3 domain binding glutamic acid-rich protein-like 3 protein_id : NP_542126.1

name	Ccdc21 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31541892 CCDS:CCDS18765.1 GeneID:70012 MGI:1917262
definition	codon_start : 1 exception : mismatches in translation product : coiled-coil domain containing 21 protein_id : NP_653110.2

name	EG665186 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:123959720 GeneID:665186 MGI:3702974
definition	codon_start : 1 product : uromodulin precursor-like protein_id : NP_001074181.1

name	Catsper4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244466 CCDS:CCDS18766.1 GeneID:329954 MGI:3043288
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006811 - ion transport [Evidence IEA] codon_start : 1 note : cation channel of sperm 4 product : channel, sperm associated 4 protein_id : NP_808534.1

name	Cnksr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486674 GeneID:194231 MGI:2670958
definition	GO_component : GO:0005938 - cell cortex [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence IEA]; GO:0030674 - protein binding, bridging [Evidence ISS] GO_process : GO:0007265 - Ras protein signal transduction [Evidence ISS]; GO:0007266 - Rho protein signal transduction [Evidence ISS] codon_start : 1 product : connector enhancer of kinase suppressor of Ras 1 protein_id : NP_001074516.1

name	Zfp593 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13195642 GeneID:68040 MGI:1915290
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : zinc finger protein 593 protein_id : NP_077177.1

name	Grrp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253170 GeneID:72690 MGI:1919940
definition	codon_start : 1 product : glycine/arginine rich protein 1 protein_id : XP_485455.4

name	Pdik1l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122689 CCDS:CCDS18768.1 GeneID:230809 MGI:2385213
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0051301 - cell division [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : PDLIM1 interacting kinase 1 like protein_id : NP_666268.1

name	Trim63 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124244070 GeneID:433766 MGI:2447992
definition	GO_component : GO:0043292 - contractile fiber [Evidence ISS]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006936 - muscle contraction [Evidence ISS]; GO:0043161 - proteasomal ubiquitin-dependent protein catabolism [Evidence IDA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : ring finger protein 28; muscle ring finger protein 1 product : tripartite motif-containing 63 protein_id : NP_001034137.2

name	Slc30a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89179312 GeneID:230810 MGI:106637
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008324 - cation transporter activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006812 - cation transport [Evidence IEA] codon_start : 1 note : zinc transporter 2 product : solute carrier family 30 (zinc transporter), member 2 protein_id : NP_001034766.1

name	Extl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9624986 CCDS:CCDS18770.1 GeneID:56219 MGI:1888742
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0050508 - glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] codon_start : 1 exception : mismatches in translation note : multiple exostoses-like 1 product : exostoses (multiple)-like 1 protein_id : NP_062524.1

name	LOC434166 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253172 GeneID:434166
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478527.1

name	Pafah2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527096 CCDS:CCDS18771.1 GeneID:100163 MGI:2140321
definition	GO_component : GO:0008247 - 2-acetyl-1-alkylglycerophosphocholine esterase complex [Evidence IEA] GO_function : GO:0003847 - 1-alkyl-2-acetylglycerophosphocholine esterase activity [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0016042 - lipid catabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : platelet-activating factor acetylhydrolase 2 protein_id : NP_598641.1

name	Stmn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9789995 CCDS:CCDS18772.1 GeneID:16765 MGI:96739
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005874 - microtubule [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0015631 - tubulin binding [Evidence ISS] GO_process : GO:0007409 - axonogenesis [Evidence IMP]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0007019 - microtubule depolymerization [Evidence ISS]; GO:0007052 - mitotic spindle organization and biogenesis [Evidence ISS]; GO:0031115 - negative regulation of microtubule polymerization [Evidence IDA]; GO:0051272 - positive regulation of cell motility [Evidence IGI] codon_start : 1 note : leukemia associated phosphoprotein p18; metablastin; oncoprotein18; prosolin; leukemia-associated product : stathmin 1 protein_id : NP_062615.1

name	Paqr7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313652 CCDS:CCDS18773.1 GeneID:71904 MGI:1919154
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0005496 - steroid binding [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : membrane progestin receptor alpha product : progestin and adipoQ receptor family member VII protein_id : NP_082271.1

name	2610002D18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487374 GeneID:69885 MGI:1917135
definition	codon_start : 1 product : hypothetical protein LOC69885 protein_id : NP_001074568.1

name	2410166I05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313286 CCDS:CCDS18775.1 GeneID:76824 MGI:1924074
definition	GO_component : GO:0005615 - extracellular space [Evidence IEA] GO_function : GO:0005386 - carrier activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : hypothetical protein LOC76824 protein_id : NP_084035.1

name	Sepn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111118964 GeneID:74777 MGI:2151208
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : selenoprotein N, 1 protein_id : NP_083376.2 transl_except : (pos:complement(134098253..134098255),aa:Sec)

name	Man1c1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46402229 CCDS:CCDS18776.1 GeneID:230815 MGI:2446214
definition	GO_component : GO:0005794 - Golgi apparatus [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA] [Evidence ISS]; GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IEA] [Evidence ISS] GO_process : GO:0006013 - mannose metabolism [Evidence ISS]; GO:0030166 - proteoglycan biosynthesis [Evidence ISS] codon_start : 1 product : mannosidase, alpha, class 1C, member 1 protein_id : NP_997120.1

name	Ldlrap1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21704092 GeneID:100017 MGI:2140175
definition	GO_component : GO:0030121 - AP-1 adaptor complex [Evidence ISS]; GO:0030122 - AP-2 adaptor complex [Evidence ISS]; GO:0009925 - basal plasma membrane [Evidence ISS]; GO:0005829 - cytosol [Evidence ISS]; GO:0005769 - early endosome [Evidence IDA] GO_function : GO:0030276 - clathrin binding [Evidence ISS]; GO:0001784 - phosphotyrosine binding [Evidence ISS]; GO:0005515 - protein binding [Evidence IPI]; GO:0030674 - protein binding, bridging [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0005102 - receptor binding [Evidence ISS]; GO:0015460 - transport accessory protein activity [Evidence ISS] GO_process : GO:0042632 - cholesterol homeostasis [Evidence ISS] [Evidence IMP]; GO:0008203 - cholesterol metabolism [Evidence IEA] [Evidence ISS]; GO:0006897 - endocytosis [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0048260 - positive regulation of receptor mediated endocytosis [Evidence ISS]; GO:0008202 - steroid metabolism [Evidence IEA] codon_start : 1 note : LDL receptor adaptor protein product : low density lipoprotein receptor adaptor protein 1 protein_id : NP_663529.1

name	Tmem57 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254350 CCDS:CCDS18777.1 GeneID:66146 MGI:1913396
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] codon_start : 1 note : macoilin product : transmembrane protein 57 protein_id : NP_079658.2

name	Rhd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982766 CCDS:CCDS18778.1 GeneID:19746 MGI:1202882
definition	GO_component : GO:0016021 - integral to membrane [Evidence ISS] codon_start : 1 exception : mismatches in translation note : Rh-like polypeptide product : Rhesus blood group CE and D protein_id : NP_035400.2

name	Tmem50a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34610239 CCDS:CCDS18779.1 GeneID:71817 MGI:1919067
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : small membrane protein 1 protein_id : NP_082211.1

name	D4Wsu53e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560078 GeneID:27981 MGI:106498
definition	codon_start : 1 product : hypothetical protein LOC27981 protein_id : NP_076154.2

name	Syf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312064 CCDS:CCDS18781.1 GeneID:68592 MGI:1915842
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence TAS] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA] codon_start : 1 note : CCNDBP1 interactor; GCIP-interacting protein p29 (Gcipip) product : SYF2 homolog, RNA splicing factor protein_id : NP_081056.1

name	Runx3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84579891 CCDS:CCDS18782.1 GeneID:12399 MGI:102672
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007411 - axon guidance [Evidence IMP]; GO:0048469 - cell maturation [Evidence IGI]; GO:0031069 - hair follicle morphogenesis [Evidence IMP]; GO:0006917 - induction of apoptosis [Evidence IMP]; GO:0050680 - negative regulation of epithelial cell proliferation [Evidence IMP]; GO:0045786 - negative regulation of progression through cell cycle [Evidence IMP]; GO:0031175 - neurite development [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : transcription factor AML2/CBFA3; core binding factor alpha 3; runt domain, alpha subunit 3 product : runt related transcription factor 3 protein_id : NP_062706.2

name	Clic4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7304963 CCDS:CCDS18783.1 GeneID:29876 MGI:1352754
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence ISS]; GO:0005737 - cytoplasm [Evidence ISS]; GO:0016021 - integral to membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005902 - microvillus [Evidence ISS]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005625 - soluble fraction [Evidence ISS] GO_function : GO:0005254 - chloride channel activity [Evidence ISS]; GO:0031404 - chloride ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence ISS]; GO:0006821 - chloride transport [Evidence IEA] [Evidence ISS]; GO:0006811 - ion transport [Evidence IEA]; GO:0030336 - negative regulation of cell migration [Evidence ISS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : chloride intracellular channel 4 (mitochondrial) protein_id : NP_038913.1

name	Srrm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7949115 GeneID:51796 MGI:1858303
definition	GO_component : GO:0016363 - nuclear matrix [Evidence ISS]; GO:0005634 - nucleus [Evidence IEA]; GO:0005681 - spliceosome complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0003723 - RNA binding [Evidence ISS] [Evidence IEA]; GO:0031202 - RNA splicing factor activity, transesterification mechanism [Evidence ISS] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence ISS] [Evidence IEA] codon_start : 1 exception : mismatches in translation note : plenty-of-prolines-101; serine/arginine repetitive matrix protein 1 product : Ser/Arg-related nuclear matrix protein protein_id : NP_058079.1

name	A330049M08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21704094 CCDS:CCDS18784.1 GeneID:230822 MGI:2444888
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : hypothetical protein LOC230822 protein_id : NP_663530.1

name	Dscr1l2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12667790 CCDS:CCDS18785.1 GeneID:53902 MGI:1858220
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0019722 - calcium-mediated signaling [Evidence IEA] codon_start : 1 product : Down syndrome critical region gene 1-like 2 protein_id : NP_075356.1

name	Npal3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037383 CCDS:CCDS18786.1 GeneID:74552 MGI:1921802
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : novel protein containing a DUF803 domain product : NIPA-like domain containing 3 protein_id : NP_083271.1

name	4930555I21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313496 CCDS:CCDS18787.1 GeneID:78806 MGI:1926056
definition	codon_start : 1 product : hypothetical protein LOC78806 protein_id : NP_084465.1

name	Grhl3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71480136 GeneID:230824 MGI:2655333
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007398 - ectoderm development [Evidence IMP]; GO:0008544 - epidermis development [Evidence IMP]; GO:0007389 - pattern specification [Evidence IMP]; GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0042060 - wound healing [Evidence IMP] codon_start : 1 note : grainy head-like 3; transcription factor hSOM1; sister-of-mammalian grainyhead product : transcription factor CP2-like 4 protein_id : NP_001013778.1

name	LOC676072 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:676072
definition	number : 3 pseudo : _no_value

name	LOC676072 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:676072
definition	number : 2 pseudo : _no_value

name	LOC676072 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:676072
definition	number : 1 pseudo : _no_value

name	LOC665287 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665287
definition	number : 2 pseudo : _no_value

name	LOC665287 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665287
definition	number : 1 pseudo : _no_value

name	1700029M20Rik (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:73937
definition	number : 1

name	1700029M20Rik (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:73937
definition	number : 2

name	1700029M20Rik (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:73937
definition	number : 3

clone name	MSMg01-370H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498P16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-496L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-184E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-309L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178J03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302K24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292D22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314M17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-208G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-217O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228M02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324H15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197O15
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-446L09.T7 (MSMg01no446_l09.b1)	MSMg01-446L09.TJ (MSMg01no446_l09.g1)
ACC	AG535341	AG535342
length	749	737
length of high quality (start - end)	249 (63 - 311)	453 (64 - 516)
definition	CHROMAT_FILE: MSMg01no446_l09.b1 PHD_FILE: MSMg01no446_l09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:19 2005	CHROMAT_FILE: MSMg01no446_l09.g1 PHD_FILE: MSMg01no446_l09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:19 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCAGGGT CATTTCTGGATGTGATGTGAGTTTTTGGCCAGCCTTGGACAACTGAGTAC ATGAGACTCTTGTCTCAGCAAACAAAACAAAACAGGGCTAGAGAGATGGT TCTATGTTTAAGAGTATGTAGTGCTCTTCCAGAGACCCAAGTTTGGTTCC CAGAACCTACTTTGGGGAGATCACAGCTGCCTGTACCTCTAGCTCCAAGG AGTCCAACGTCCTCTTTTGGTGTTCTCAGACATTGTATTTACATGCACAT ACCTGCAGTCATTCTCTCTTAATTAAAAGCAAAATTTAAAAACCTAAGAA AACCCCATATTTCCTACATTGAAAGACAAGGAGAGGTAGGATCCAGAACT CAGGTAGAGATTTAGGCCAGGCAGTTGTGACACATACTTTTAATCTCAGC ACTTGGGAGGCAGAAGCAGGCAGATCTCTGTTTTAAGGCCAGCCTGGACT ACTTAGTGAGTTCCAGGACACAAAGAAAACATTTCTCAAAAAAACTACGG CGTGGAGGCGGGTAGAGGAACGTACTTATTTTCTCTTTCCCTTTCCTTTC CTCTTTCCTTTTCTTTCTCTCTCCCTTTCTTCCTTTTCCTCCCTTTTCCC CTTTTTTTTTTTTCCCTTCCGGTTTTTCCGTTGATATCCATTCCTTTCTC CTCCATACTCTCTTCCGTATTTTTCCTTCTTCGTCCCTCTCTTTTTTCT	TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXCACTGGCCTCTGTCTGTGCTTCCCTTGAATGCGTGAA CCAGTCAGCTCTGTATTTCTAACAGGTGGCATGATCTCTCAAAGAGTCAA CACGGCGCACCTGTCCTGACGATGACTCTTTCAGCACTGAATGCCTCCTG CACTTAAACCTGACACAGGGCCAGGCCCTTCCTAAACATTCAATCCCATG CCAACCCTGCCAGCCTCAGTATCATTTCCACCCACTTCTCTGTGTGGATG CACATAAGTGAGGGGTGAGAATTACGTGTGCACACTAACATGCAGAAGCC AGAAGACAACCTCAGGTATTGTCCACCTTGATTCTGAGACAGGATCTCCA TGGCCTGGGACTCACCCAGTAAGTGGAGCTGGCTGGCCAGGGAGCCCCAG AGGTCTTGCCCGCCTGGCTCCCAAGTCCTGGGATTACATCTGGCTGTCCT GGAACCCATTCTGTAGACCAGGCTGGCCTTGAACTCACAGAGGTCTGCGT CTATGCTGGGAATAAAGGTTTGGCCACCTCCTCCATCTACACCTGGCTTT TGGACGGATCCTCTATCTATCTTCTAGTTGCCCGTCTCAAGTCTTTGCTA CTGGACAGCAAACATTCCGACAGTTGAGTCATTTCCCTCTTCCCCTTCCA TCTGGTTCTACAACCAAAGGTTGTGTTCCTCTGGTTG
quality values	Open. Hide. 22 24 24 16 16 11 17 11 8 8 15 19 29 30 39 23 17 10 10 12 22 25 12 9 8 8 6 6 8 12 10 12 19 19 19 19 21 31 34 23 17 16 28 28 23 25 24 19 18 9 9 9 9 8 8 8 12 10 10 12 12 15 19 24 29 30 37 37 41 41 47 47 50 53 59 53 53 37 37 29 33 33 42 44 53 53 47 47 47 43 54 54 50 57 57 68 68 68 68 68 68 68 68 68 68 54 54 54 54 54 54 57 57 47 42 42 35 35 48 48 57 57 57 57 57 57 57 57 54 54 57 57 57 57 47 47 47 57 57 57 68 68 59 50 50 50 50 50 50 57 68 68 68 68 68 68 68 68 68 68 68 57 57 57 47 47 50 50 50 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 59 59 59 59 59 68 68 68 68 68 54 54 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 54 54 50 50 50 50 50 50 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 28 28 12 16 11 11 11 18 25 34 41 37 41 48 48 48 48 59 48 48 59 59 59 59 59 59 57 57 57 57 57 57 59 57 68 57 57 54 54 54 48 48 59 59 59 59 59 59 57 57 48 48 48 57 57 57 57 53 53 50 59 59 59 59 47 25 25 11 9 9 9 9 9 9 9 7 7 7 8 19 21 41 41 41 40 43 43 43 43 57 57 57 59 47 47 47 39 43 47 43 57 48 57 57 57 59 59 34 30 19 20 23 23 28 23 23 36 44 47 54 48 48 43 36 36 25 28 30 42 39 46 57 43 38 28 23 23 36 38 46 57 43 37 46 44 57 46 37 43 44 57 44 44 43 43 43 47 57 57 50 43 37 36 36 43 43 32 43 43 50 44 57 43 43 43 43 43 42 32 24 13 13 15 18 32 41 44 42 42 44 42 36 41 28 42 42 57 57 57 46 43 43 57 57 44 36 25 25 25 36 36 46 44 43 37 43 39 46 39 39 39 32 35 35 34 33 30 30 30 30 25 30 37 43 39 47 43 43 39 43 37 37 28 28 25 25 21 21 26 23 14 14 14 21 15 22 34 34 32 34 23 20 19 32 32 37 34 30 22 18 18 18 12 14 21 15 15 11 12 12 12 12 11 11 12 16 12 13 10 13 17 21 19 16 18 20 12 12 12 15 16 20 23 32 30 29 14 14 14 14 14 21 14 14 12 13 11 11 11 11 11 11 15 12 13 13 12 12 10 9 9 9 9 9 8 8 8 8 10 8 10 9 11 9 9 9 11 10 10 10 8 10 10 8 8 8 8 8 19 11 11 11 10 12 15 22 13 13 12 10 14 10 10 10 8 10 10 19 14 12 12 9 10 10 10 15 13 9 8 8 8 10 12 19 26 24 21 13 13 10 8 8 8 8 19 13 18 15 13 7 6 8 6 13 15 19 20 22 17 19 9 9 9 9 8 8 6 6 8 8 11 11 10 10 11 9 10 9 8 8 8 8 8 8 13 10 10 11 11 11 11 10 10 10 17 19 10 8 8 6 6 8 8 6 6 8 8 8 8 9 10 10 12 12 12 8 8 8 8 10 11 10 9 9 9 8 8 10 10 12 9 11 10 11 11 10 10 10 12 8 8 10 13 13 10 8 6 6	Open. Hide. 18 18 18 11 11 12 18 27 41 43 41 41 39 39 39 39 39 27 10 6 6 6 6 6 6 6 8 11 9 12 10 17 23 22 22 34 34 47 47 47 37 44 39 37 37 27 23 8 8 6 6 6 6 7 12 12 18 15 22 27 27 33 33 33 33 36 36 59 57 57 57 59 59 59 59 57 57 57 57 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 48 48 39 41 41 41 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 51 51 68 68 68 68 68 68 57 57 57 68 68 68 57 57 59 59 57 57 57 57 57 57 57 57 57 57 59 59 68 68 68 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 52 52 52 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 44 43 18 18 12 26 13 13 12 15 28 43 47 62 62 62 62 62 62 62 62 62 62 62 59 59 68 68 68 68 68 59 57 57 57 57 57 57 59 57 45 43 43 43 43 43 35 35 43 43 52 57 57 57 57 57 57 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 52 52 52 57 57 57 57 57 57 57 57 68 68 68 68 68 59 59 59 59 57 57 57 44 44 50 48 48 57 57 57 43 43 35 35 42 42 47 57 57 59 59 59 59 57 57 57 57 57 57 57 57 57 57 57 38 41 41 48 57 57 59 47 42 37 39 39 59 59 57 48 48 48 48 48 47 43 43 47 41 35 35 39 42 48 47 42 42 42 37 42 37 34 28 33 25 28 37 37 39 39 40 34 34 28 20 20 30 26 37 37 34 34 30 22 22 30 30 28 36 36 36 36 39 33 31 18 18 11 9 13 10 10 10 13 11 24 22 25 22 30 28 30 32 40 40 40 34 34 28 28 25 28 28 25 25 25 43 32 33 24 23 29 29 37 31 37 39 24 24 12 12 11 18 11 22 19 24 24 23 26 19 17 10 10 10 10 10 10 8 8 8 8 8 6 6 8 8 10 10 12 18 15 14 13 11 13 11 8 8 8 8 15 19 17 9 8 8 8 6 6 6 6 8 8 22 23 18 12 9 9 11 12 16 16 24 28 19 14 9 9 10 9 9 9 9 10 10 16 8 8 8 8 8 8 8 8 10 17 10 10 8 6 8 8 8 8 10 12 12 11 11 11 11 11 15 13 10 10 10 9 9 8 8 8 8 8 8 9 9 9 9 9 10 13 10 10 10 11 12 10 11 9 9 10 9 9 12 12 14 12 10 10 10 8 10 10 11 11 13 15 9 8 6 6 7 8 8 8 8 11 8 9 9 8 8 8 10 10 8 6 6 6 6 6 6 9 9 12 15 12

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no446_l09.g1 MSMg01no446_l09.g1 CHROMAT_FILE:
MSMg01no446_l09.g1 PHD_FILE: MSMg01no446_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:19 2005
         (453 letters)



>mm_chr4_134212399_134213251
          Length = 853

 Score =  806 bits (417), Expect = 0.0
 Identities = 444/453 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactggcctctgtctgtgcttcccttgaatgcgtgaaccagtcagctctgtatttctaac 60
           |||| |||||||||||||||| ||||||||| |||||||||||| |||||||||||||||
Sbjct: 201 cacttgcctctgtctgtgctttccttgaatgtgtgaaccagtcacctctgtatttctaac 260

                                                                       
Query: 61  aggtggcatgatctctcaaagagtcaacacggcgcacctgtcctgacgatgactctttca 120
           ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 261 aggtggcatgatctctcaaagagtcgacacggcgcacctgtcctgacaatgactctttca 320

                                                                       
Query: 121 gcactgaatgcctcctgcacttaaacctgacacagggccaggcccttcctaaacattcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcactgaatgcctcctgcacttaaacctgacacagggccaggcccttcctaaacattcaa 380

                                                                       
Query: 181 tcccatgccaaccctgccagcctcagtatcatttccacccacttctctgtgtggatgcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccatgccaaccctgccagcctcagtatcatttccacccacttctctgtgtggatgcac 440

                                                                       
Query: 241 ataagtgaggggtgagaattacgtgtgcacactaacatgcagaagccagaagacaacctc 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 ataagtgaggggtgagaattacgtgtgcacactagcatgcagaagccagaagacaacctc 500

                                                                       
Query: 301 aggtattgtccaccttgattctgagacaggatctccatggcctgggactcacccagtaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtattgtccaccttgattctgagacaggatctccatggcctgggactcacccagtaag 560

                                                                       
Query: 361 tggagctggctggccagggagccccagaggtcttgcccgcctggctcccaagtcctggga 420
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 tggagctggctggccagtgagccccagaggtcttgcctgcctggctcccaagtcctggga 620

                                            
Query: 421 ttacatctggctgtcctggaacccattctgtag 453
           |||||||||||||||||||||||||||||||||
Sbjct: 621 ttacatctggctgtcctggaacccattctgtag 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information