BAC Information

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BAC

Clone NameMSMg01-446N13
Chromosome4 (Build37)
Map Location 126,741,378 - 126,943,726
singlet/doubletdoublet
Overlap geneZmym6, LOC100039968, LOC621588, Dlgap3, BC003266
Upstream gene1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320, Sfpq, Zmym1, LOC665245
Downstream geneGja4, Gjb3, Gjb4, Gjb5, LOC667296, LOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446N13.T7 (MSMg01no446_n13.b1)MSMg01-446N13.TJ (MSMg01no446_n13.g1)
ACCAG535444AG535445
length734735
length of high quality
(start - end)
313 (316 - 628)320 (317 - 636)
definitionCHROMAT_FILE: MSMg01no446_n13.b1 PHD_FILE: MSMg01no446_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:29 2005CHROMAT_FILE: MSMg01no446_n13.g1 PHD_FILE: MSMg01no446_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,741,378 - 126,741,690)(126,943,408 - 126,943,726)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCAGCATAG
CTACCACTATTGGCTTATTCAAACATCAGCAGAAAATTACATGTATGTGC
AGGGTGTCAGAGTTCTGTGAGTTGTTGACTCAGTTCAGATAGCCCTGTTA
TGTCCTCACATTCCTCCTTATCTTATGGTCAAGCTGTTCCCAGGAATGTT
TTAACTACGGGGCATACCCAGGTTTGATTTTCTTTTTTTCTCAGCCCCAG
GCAGCCTCTAGGCTCACAAACAACCAGCAATTTCTGAGTACTTTATATGA
CTTACAGGTTTTTTTATTTCATCTTTCTTTCAGCCCTAAAGTCAAATTCC
TGCCTGAAGCTCACTTCTTTGTCCTTAGCCATTGTCAGACTCCTCCCAAG
CGGTACCCCCTAAGGCTTTCCACAGTAGATATTGTTTTACATTGGATTTA
CATCTTAGAAGGCTGTTGTTAGAAACTCTTTGAAAACTGCATAGAACTTT
CCAACCCTGGAGGCCAAACTAGTAGGGAGGAAGCTCCCAGTCCAGTTCCA
ACTTGATTTTTTGTTTGTTTCTTTTTTTTTTATGTTTATAGGAACTTTAT
TCATAATTGTCTAAATATGGAAGCCAACAAGCTGCTCTTTTTTTTTTTAA
TTAGGTATTTTCCTCGTTTACATTTTCATTGTTATCCCAAAGGCCCCCCT
TACCCACCCCCCCAATCCCCTACCCCCCCACTCC
GAGGCCTGGNGGNCGCCTGGCCTACGCATCGGGGNGAACNANAGAAGGAT
TGCGAATACTCTGTCTGGACGNCCTGACTTACGATTATTCAATTGTAAGT
ACCACATGCATGCAGTCCCTGTGAAGGCCAGAAGAGAGTATTGAATCCTC
TAGAACTGGAGTTGTAGACAGTTGTGAGCCACCACGTGGGTGCTAGACAT
CGAACCGAGATCCTCCTGAAGAGGAGCCATGGCTCTTAAATTTTTTCATC
TCTCCAGCCTAGGTTGGCTTCTTAGACTCATTAGCAACCCCGCCTCTGCC
CCAGAGTTAGATCNCTTCTACTTTCTCTAGATGGGGGGTCCTCCACCCTA
TTCCCAGGACACCCAGTCTCAGCTCAAAGGACATCATCCTCTGCCCCTGG
GTTTGCCTCCTCTACCTGTCTTATAAAATCTTCTATTTCTTTTTATCCAT
AACAAAAGGCTGAAATGTAAGGATATGATATCAGAACCCAGCCTCTGCAC
AGGCGTGCTCTCATGCATACTGATGGGTACCCTACTGGGACATTGTCTCT
GAGCCCCCAGACTTGCGGGTGCCAAGACAATTCACCTAGGAGTGCCACAT
CCTGCTCTCTGCCCAGTCGTCCCTGATTCTTGCCTGGGAATCTTTTTTTC
TTATGCAGACCCTGGCTGTGAGATGGCTCACCCTCTCCTCCAAAAAAGTA
CACAAGGCTTCAGCCCCTGCTGCGTACGCTCTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_n13.b1 MSMg01no446_n13.b1 CHROMAT_FILE:
MSMg01no446_n13.b1 PHD_FILE: MSMg01no446_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:29 2005
         (313 letters)



>mm_chr4_126741178_126741890
          Length = 713

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcatctttctttcagccctaaagtcaaattcctgcctgaagctcacttctttgtcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttcatctttctttcagccctaaagtcaaattcctgcctgaagctcacttctttgtcct 260

                                                                       
Query: 61  tagccattgtcagactcctcccaagcggtaccccctaaggctttccacagtagatattgt 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagccaatgtcagactcctcccaagcggtaccccctaaggctttccacagtagatattgt 320

                                                                       
Query: 121 tttacattggatttacatcttagaaggctgttgttagaaactctttgaaaactgcataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttacattggatttacatcttagaaggctgttgttagaaactctttgaaaactgcataga 380

                                                                       
Query: 181 actttccaaccctggaggccaaactagtagggaggaagctcccagtccagttccaacttg 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 actttccaaccctggaggccaaactagtaaggaggaagctcccagtccagttccaacttg 440

                                                                       
Query: 241 attttttgtttgtttcttttttttttatgtttataggaactttattcataattgtctaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attttttgtttgtttcttttttttttatgtttataggaactttattcataattgtctaaa 500

                        
Query: 301 tatggaagccaac 313
           |||||||||||||
Sbjct: 501 tatggaagccaac 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no446_n13.g1 MSMg01no446_n13.g1 CHROMAT_FILE:
MSMg01no446_n13.g1 PHD_FILE: MSMg01no446_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:29 2005
         (320 letters)



>mm_chr4_126943207_126943926
          Length = 720

 Score =  586 bits (303), Expect = e-172
 Identities = 315/319 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   ctactttctctagatggggggtcctccaccctattcccaggacacccagtctcagctcaa 61
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 520 ctactttctctagatggggggtcctccaccctagtcccaggacacccagtctcagctcaa 461

                                                                       
Query: 62  aggacatcatcctctgcccctgggtttgcctcctctacctgtcttataaaatcttctatt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aggacatcatcctctgcccctgggtttgcctcctctacctgtcttataaaatcttctatt 401

                                                                       
Query: 122 tctttttatccataacaaaaggctgaaatgtaaggatatgatatcagaacccagcctctg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tctttttatccataacaaaaggctgaaatgtaaggatatgatatcagaacccagcctctg 341

                                                                       
Query: 182 cacaggcgtgctctcatgcatactgatgggtaccctactgggacattgtctctgagcccc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 340 cacaggcgtgctctcatgcatactgatgggtaccctactgggacattgtctctgagccct 281

                                                                       
Query: 242 cagacttgcgggtgccaagacaattcacctaggagtgccacatcctgctctctgcccagt 301
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 280 cagacttgcgggtgccaagacaattcacctaggagtaccatatcctgctctctgcccagt 221

                              
Query: 302 cgtccctgattcttgcctg 320
           |||||||||||||||||||
Sbjct: 220 cgtccctgattcttgcctg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)