BAC Information

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BAC

Clone NameMSMg01-446N16
Chromosome4 (Build37)
Map Location 58,352,908 - 58,353,351
singlet/doubletsinglet
Overlap geneMusk
Upstream geneLOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2, LOC100041513, Akap2, D630039A03Rik, Txn1, Txndc8, Svep1
Downstream geneEdg2, LOC675306, LOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446N16.T7 (MSMg01no446_n16.b1)MSMg01-446N16.TJ (MSMg01no446_n16.g1)
ACCAG535450AG535451
length792731
length of high quality
(start - end)
111 (60 - 170)446 (87 - 532)
definitionCHROMAT_FILE: MSMg01no446_n16.b1 PHD_FILE: MSMg01no446_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:30 2005CHROMAT_FILE: MSMg01no446_n16.g1 PHD_FILE: MSMg01no446_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCGCTAAACGACTCACTNATACGAGAGGATCCGCGGAATTCTTGATCTT
TCATTTCAAAAGGAATGGCATAATATTTATACAGAAGGAAACTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGCAGGGTGGGTGTAGCTACTATCTTTCTCTGGCT
GCCAGGTGTGTGCATGAGTGGATACATTTACACCTGTTTCTTGGAAGTAC
GCTTACACTACACACACACACACACACACACACACACTCCCACCCACACA
CACTTTTTCTCTTTTTAGGCACAGACACACAGACACTGCCCTGGATTTTT
CTTCTCGTTATACAAGTTTATATAACCACTGACCTCTGGCCTTATATTTC
TAAACATTTTTTAACTTGCAACAATTTACTCCTAGATACCTACCTTTATA
AATAATTAAGCATCATAACTTTGGAGGCTTTCTTCTGTCCATGCTATTCT
TATGCTTTATTCTTATCATATCTTCTATAACTCAAAAAAACATCCATTAC
TTTTTAGAATAAGGCATATCNCCTGCTTATCAATCCCCTATCCTATTCCC
TTTATCTTTCCTACTCATCCCACAACTCTCTCTGATTTTATTTCAATCCA
TCGCTATTTTTTTTTTTTGTCCATTCCCCCCCATTTATAAACACCTTCCC
AACCTTATACTTCACTCATATCACCACCCTTTTTTAATCTCTTTCTCCTT
TCACTTTTATTCACTACTTCTCCCTCACATTTCTTTCTCTCN
CCCAATTCCCTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTATCATATT
TCTCAGAAGCCCAACATCTTACAGACTCAGGTTTTTGTGTTAGGCCTAAG
CAGCTAGCCATCTTTAACTGAAAACTCTCTCCGATTTTGCTACAAAACAG
CAATGAGACAGCCTGAGAGCTGAATGTCTGTGGACTGTCTGTGTGCTTGG
TGGCTTTGCCTTTTATATCTTGTTTTCGAGGATCATCTCTTTCCAGTTTA
TAGAAGCAAAGCTACATGCTTTCCTTGTTTGTCTTGTTGGTTCCTTCCTC
GGAGAAGAAAAGCTATGTAGTGCTGTGAACAGCTCAGAAGCAAGCACTGC
CCTAGCACTGCCTGTCGGGTTTTGTCTTTTGCTGTTGTTGTACGGCTAAG
TGCTGGTGCCCAAGACTGGAGTCTACATATAGTTTCTAGGAACCTGCCCC
CGGCTAATCCTGATTGGCAAATAAAGATGCCAGTAGGTAACAGCTTGGTA
GAATAGACACACGCGAGGATCTGGTTTCCCAGACTGTGTACCCCTGGAGT
TATGCCATGAGGAAGCCGTATGGCCTATCTACCCCTGTTCATAGGAAAAA
AAAATTGTTCATGGAATAAAACCCCCCGCTGCCTTCATTTTTACCCCCCC
TTTTAACCCCTTCATTTCTCTTTCTCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_n16.g1 MSMg01no446_n16.g1 CHROMAT_FILE:
MSMg01no446_n16.g1 PHD_FILE: MSMg01no446_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:30 2005
         (446 letters)



>mm_chr4_58352824_58353667
          Length = 844

 Score =  727 bits (376), Expect = 0.0
 Identities = 428/446 (95%), Gaps = 2/446 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgttatcatatttctcagaagcccaacatcttacagactcaggtttttgtgttaggcc 60
           ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 528 tttgttatcatatttctcagaagcccaacatcttatagacccaggtttttgtgttaggcc 469

                                                                       
Query: 61  taagcagctagccatctttaactgaaaactctctccgattttgctacaaaacagcaatga 120
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 468 taagcagctagccatctttaactgaaaa--ctctccgattttgctacaaaacagcaatga 411

                                                                       
Query: 121 gacagcctgagagctgaatgtctgtggactgtctgtgtgcttggtggctttgccttttat 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 410 gacagcctgagagctgaatgtctgtgggctgtctgtgtgcttggtggctttgccttttat 351

                                                                       
Query: 181 atcttgttttcgaggatcatctctttccagtttatagaagcaaagctacatgctttcctt 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 350 atcttgtttgcgaggatcatctctttccagtttatagaagcaaagctatgtgctttcctt 291

                                                                       
Query: 241 gtttgtcttgttggttccttcctcggagaagaaaagctatgtagtgctgtgaacagctca 300
           ||||| |  ||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 290 gtttgccaagttggctccttcctcggagaagaaaagctatgtagtgctgtgaacaactca 231

                                                                       
Query: 301 gaagcaagcactgccctagcactgcctgtcgggttttgtcttttgctgttgttgtacggc 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 230 gaagcaagcactgccctagcactgcctgtcgggttttgtcatttgctgttgctgtacggc 171

                                                                       
Query: 361 taagtgctggtgcccaagactggagtctacatatagtttctaggaacctgcccccggcta 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 170 taagtgctggtgcccaagactggagtctacatatagtttctaggaacctgcccctggcta 111

                                     
Query: 421 atcctgattggcaaataaagatgcca 446
           || |||||||| ||||||||||||||
Sbjct: 110 attctgattggtaaataaagatgcca 85


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 844
Length adjustment: 10
Effective length of query: 436
Effective length of database: 834
Effective search space:   363624
Effective search space used:   363624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)