NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGTGGTTCTGACTAAGAAGCTGCAGCATGAAACCCGGGC
ATGATTTGGGTTTTGTGACTTGTTATACTCTTCACACATGGTTTCTATGC
ATTTTTTTGTGAATTTTGACCATATAGCTGGTGTACTTGGAAGTTAGTGT
CTGGCCAATAATTTGCTAAAGGATAGAAAATTTTAGATTGTTTCCATATT
TAATTAAGTTTTCAATAAAGCTTTTCTTATACCATTTAAAAAATCTTTCA
TTAATTAATTATATGGACACTTCCAATAGTAATTTTAAGATTTGTATTCT
GCTTAGAGGTCAATACATAGCTTTTAAACTCTATTATGACTCCATTGAGG
AAATAATGATTTAGATCCAGCAATTATAGGAAATCTAAGGAAATCTATAT
ATAATATAAATCATGTAATATATATGTAAATGCAAATAAGATTTTATTTG
CATAAAATTGATAATCATATACTTTTTCACTGCATGTGCATTTTTAATTC
TTCTGCTGTGTAAGAACATTAAGAGTGTTCTCTATTGTGACTCTTTCAGA
ATAGATAGTATTGCCAGGCAATATCATTAGACATTTGACATTTCCAAAAC
TGGCAAAACAAAGACACTCCTATATCAGGACATTTTGATATAGAATCACA
GTTATTATGATGATATCAAACAGACTAAAATTTCTAGAAAAAAATCCAN

NNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCACTCGGACTGTGCGTT
TCTTCTGTGATTTGCACCTATTGGGCATATCCTATTTCTTACTTATACTG
TCAAAACTTTCTCTGATTCATCGCTTTATCTACCCATCAATTAGACATTA
TTGTTTAGAAGTAAAGGGGCATACTAAATGATTTCAGCCAGAGGGATGAC
AGGTGTGAACTAAGGACATGGGCATGTCTTTATTCTAGCCACATCATATG
GCCCAGCCCGCGGGACAATCGAACAGCATCAGAGGAACCACCTGTGGAGA
GAATGGGGGACAAGAAACACAAAAACTGGACAGCAAGTCTGATTGATCAA
GCTGACAAATTTTATCTTTCCCAGGCAGGTTTTATACCCCTAGAAGCAGG
ATATGGGGAGGGGAATAACGCAGAATCACTTTGTTTCTGGGGGAATGCAC
CTGTTCCCAAAAGCAGGATATTGGCTAGGTAAACAGTTCAGCAGGAGGAA
CAGAACAGAGTGGGTTGCTAGGTACCTGTCCACAAGATCTATACGCTATT
TTGGTCTTAACTGGGGGAGAGGAATTTTTCTACTGAAGCCTGAACAATTT
TCGACAGTAAATCTCTTCCTTAGCCCGTATTTTTTTTTTCTTTAACCAAA
AATTTTTGCTCATCAAGTCTTCTTTGGTTGGTATAAGGGCCGTTCATTTT
CTTCTTCCGGGTTCGTTCCCCTCCTTATACTACAAG

Query= MSMg01no447_c22.b1 MSMg01no447_c22.b1 CHROMAT_FILE:
MSMg01no447_c22.b1 PHD_FILE: MSMg01no447_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:58 2005
         (604 letters)



>mm_chr4_27497975_27498977
          Length = 1003

 Score =  984 bits (509), Expect = 0.0
 Identities = 580/611 (94%), Gaps = 16/611 (2%)
 Strand = Plus / Minus

                                                                       
Query: 7   attctgtggttctgactaagaagctgcagcatgaaacccgggcatgatttgggttttgtg 66
           ||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 908 attctgtggttctgagtgagaagctgcaacatgaaacccgggcatgatttgggttttgtg 849

                                                                       
Query: 67  acttgttatactcttcacaca-tggtttctatgca-----------tttttttgtgaatt 114
           ||||||||||||||||||||| | |||||||||||           ||||||||||||||
Sbjct: 848 acttgttatactcttcacacact-gtttctatgcattttttttttttttttttgtgaatt 790

                                                                       
Query: 115 ttgaccatatagctggtgtacttggaagttagtgtctggccaataatttgctaaaggata 174
            ||||||||||||||||| |||||||||||||||||||||||||| ||||||  ||||||
Sbjct: 789 ctgaccatatagctggtgcacttggaagttagtgtctggccaatactttgctggaggata 730

                                                                       
Query: 175 gaaaattttagattgtttccatatttaattaagttttcaataaagcttttcttataccat 234
           |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 729 gaaaattttagattatttccatatttaattaagttttcgataaagcttttcttataccat 670

                                                                       
Query: 235 tt-aaaaaatctttcattaattaattatatggacacttccaatagtaattttaagatttg 293
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ttaaaaaaatctttcattaattaattatatggacacttccaatagtaattttaagatttg 610

                                                                       
Query: 294 tattctgcttagaggtcaatacatagcttttaaactctattatgactccattgaggaaat 353
           |||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||
Sbjct: 609 tattctgcttagaggtcaatacttagc--ttaaactctattatgactccattgaggaaat 552

                                                                       
Query: 354 aatgatttagatccagcaattataggaaatctaaggaaatctatatataatataaatcat 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aatgatttagatccagcaattataggaaatctaaggaaatctatatataatataaatcat 492

                                                                       
Query: 414 gtaatatatatgtaaatgcaaataagattttatttgcataaaattgataatcatatactt 473
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 491 gtaatatatatgtaaatgcaaataagagtttatttgcataaaattgataatcatataatt 432

                                                                       
Query: 474 tttcactgcatgtgcatttttaattcttctgctgtgtaagaacattaagagtgttctcta 533
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tttcactgcatgtgcatttctaattcttctgctgtgtaagaacattaagagtgttctcta 372

                                                                       
Query: 534 ttgtgactctttcagaatagatagtattgccaggcaatatcattagacatttgacatttc 593
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttgtgactctttcaggatagatagtattgccaggcaatatcattagacatttgacatttc 312

                      
Query: 594 caaaactggca 604
           |||||||||||
Sbjct: 311 caaaactggca 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1003
Length adjustment: 10
Effective length of query: 594
Effective length of database: 993
Effective search space:   589842
Effective search space used:   589842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)