NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTTAAGTGACTTCTTTTTGGTCATAAGGTAGGTCAGGCAAAC
AATTATTGTACATTGTGGCCAGGAATGGCGCTTTACTCCTGCATACGTAC
AGATGTCCCACACATATGAAAGGAAGATGCAGGATGGCACATAGCGTCCT
CAACCTGACAGCTCAGACTCCTACATTGTGGAGAGGTGGGTGCAATGAGG
ACCCCGAGTCTTTACTCTTTCATGAATTTTTTTTCCATTTTTATTAGGTA
TTTAGCTAATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCAC
CCACCCCCACTCCCCTACCCACCCACTCCCCCTATTTGGCCCTGGTGTTC
CCCTATACTGGNGCATATAAAGTTTGCGTGTCCCATGGGCCTCTCTTTCC
AGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAG
AGCTCCAGGGTACTGGCTAGTTCATAATGTTGTTCCACCTATAGGGTTAC
AGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCC
CTGTGATCCATCCTTATCTGACTGTGAGCATCCACTTCTGTGTTTGCTAG
GACTCGGTCTTATTCTCACCACATATACGCACCTTTGTGACCTCTTTACC
ACAACCTTGCTAGACTAGCCACGGTGACACTGTTTGGCAGCCTATTATGG
CAAGG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCATAAAATTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCCCAAAAGAACTCCCCCATATGTACTCCCCGAA
AAGTGAAAATAACCCCAAACCTATATACCCCAGATTTAAATACCATTTTC
TTAACACTTGAAATTCCCAAAAAGGAGAATGGATTGGGGGCCTTAGGCCC
CCCTTAA

Query= MSMg01no447_g13.b1 MSMg01no447_g13.b1 CHROMAT_FILE:
MSMg01no447_g13.b1 PHD_FILE: MSMg01no447_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:18 2005
         (464 letters)



>mm_chr4_85263205_85264069
          Length = 865

 Score =  839 bits (434), Expect = 0.0
 Identities = 454/461 (98%), Gaps = 1/461 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttaagtgacttctttttggtcataaggtaggtcaggcaaacaattattgtac 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttaagtgaattctttttggtcataaggtaggtcaggcaaacaattattgtac 264

                                                                       
Query: 65  attgtggccaggaatggcg-ctttactcctgcatacgtacagatgtcccacacatatgaa 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attgtggccaggaatggcgtctttactcctgcatacgtacagatgtcccacacatatgaa 324

                                                                       
Query: 124 aggaagatgcaggatggcacatagcgtcctcaacctgacagctcagactcctacattgtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggaagatgcaggatggcacatagcgtcctcaacctgacagctcagactcctacattgtg 384

                                                                       
Query: 184 gagaggtgggtgcaatgaggaccccgagtctttactctttcatgaattttttttccattt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagaggtgggtgcaatgaggaccccgagtctttactctttcatgaattttttttccattt 444

                                                                       
Query: 244 ttattaggtatttagctaatttacatttccaatgctataccaaaagtcccccatacccac 303
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttattaggtatttagctcatttacatttccaatgctataccaaaagtcccccatacccac 504

                                                                       
Query: 304 ccacccccactcccctacccacccactccccctatttggccctggtgttcccctatactg 363
           |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 ccacccccactcccctacccccccactccccctatttggccctggcgttcccctatactg 564

                                                                       
Query: 364 gngcatataaagtttgcgtgtcccatgggcctctctttccagtgatggccgactaggcca 423
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggcatataaagtttgcgtgtcccatgggcctctctttccagtgatggccgactaggcca 624

                                                    
Query: 424 tcttttgatacatatgcagctagagtcaagagctccagggt 464
           |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 625 tcttttgatacatatgcagctagagtcaagagctccggggt 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 865
Length adjustment: 10
Effective length of query: 454
Effective length of database: 855
Effective search space:   388170
Effective search space used:   388170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)