BAC Information

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BAC

Clone NameMSMg01-447L17
Chromosome4 (Build37)
Map Location 147,222,757 - 147,223,241
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181
Downstream geneD4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447L17.T7 (MSMg01no447_l17.b1)MSMg01-447L17.TJ (MSMg01no447_l17.g1)
ACCAG536114AG536115
length773758
length of high quality
(start - end)		488 (51 - 538)494 (79 - 572)
definitionCHROMAT_FILE: MSMg01no447_l17.b1 PHD_FILE: MSMg01no447_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:43 2005CHROMAT_FILE: MSMg01no447_l17.g1 PHD_FILE: MSMg01no447_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTCTATTTCCAAGTTGGCCTCAAGGTCAAGCGATCCCTC
TACCTATGCTAAACCATGTCTGCCTTCATTTCTCGTTCTTGATGCTGGAC
AGAGACCCCATCACTCCTCCATCATGTATTGTCGCTGAGGCCATTTCAGG
TTTAACTAGAATTTGATTTCCTTGATCAAGAATTCTAGGAAAATTACTCA
ACTCCACTTCTAGGAACCCAAGGTCAGGATATCCTTGCTAACTTATCTCA
ACCTGTTTGTGCTGGAACCCCCTCTGGCTAACTGCTTATCTTAGCTTCTA
CTAGAGACTGCTTGTTTCTGTGAGGATTCTACTTTGGTTGCCAGATGTAA
AAATCTGGAGCTAGGGCACTCAGTGCCCTCGGCAGCTCAGCTCACTCTCC
AGTGTACGTATTGAAGAGAGACTGTGGGGTAGAGTTATCGTCCTATGAAC
CTCTGTACGCTAATCCTGATTTTTGCTGGAAATAGACCAACTCAACAATT
TTGAACCAAATTTAAAGCAGGCATTTTATTAAATATTATATACTGACCAA
GAGACAGACCTTGGTCAGATAAAATCCCCCGGAATTTTGCCAGCGCGAAA
AGGCCTTCAGTCACGTGTTTAAAGCGGGTTCCCTTTTTAAATAATTCCAT
TTGAACACCGGTATCTTTCCCCGTGAACCTTTTGGTATTTTCTCAATAAA
TCATAACATTTCCCTCCCTTTCC

NNTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGATGCCTTCTCAGACTGTG
TTTGTCACTAAAGCATTTGTCGCATTCATTGCATTTGTAAGGTTCTCTCC
TGAATGAATTTTCTGATGAATACTAAGATGGCATTGTTGGGTAAAGCATT
TGTCACATTCACTGCATTTGTACAGTTTCTCTCCTGTATGAATTCTCTGA
TGAATACTAAGATGTGATTTTCGGGTAAAGCATTTGTCACATTCACTGCA
TTTATAAGGTTTCTCTCCTGTATGAATTCTCTGATGCCTTCTCAGACTGT
TTTTCTCAGTAAAACATTTGTCACATTCACTACATTTGTAAGGTTTCTCT
CCTGCATGAATTCTATGATGAACTCTCAGAGAGCCTTTGTGAGTAAAGCA
TTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGCATGAATTCTAT
GATGAACTCTCAGATAGCCTTTGTCAGTAAAGCATTTGTCGCATTCACTA
CATTTGTAAGGTTTCTCTCCTGCTTGAAATCTATGATGAACTCTAAGACT
GCCTTTGTCAGTAAAGAATTGTCACACTCACTGCATTGGGACCGGTTCTC
TTCTGCATGAATTCTCTGATGAACTCTCCTACTGCTTTTTGTTAGAAAAC
AATTGTTTCATTCTCTACATTTTTAAGGGTTCTCTTCTCGAAGGATATCA
AAAATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_l17.b1 MSMg01no447_l17.b1 CHROMAT_FILE:
MSMg01no447_l17.b1 PHD_FILE: MSMg01no447_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:43 2005
         (488 letters)



>mm_chr4_147222553_147223441
          Length = 889

 Score =  915 bits (473), Expect = 0.0
 Identities = 482/487 (98%), Gaps = 5/487 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctctat---ttccaagttggcctcaaggtcaagcgatccctctacctatgcta 61
           |||||||||||||   |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gaattctctctatagat--caagttggcctcaaggtcaagcgatccctctacctatgcta 632

                                                                       
Query: 62  aaccatgtctgccttcatttctcgttcttgatgctggacagagaccccatcactcctcca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aaccatgtctgccttcatttctcgttcttgatgctggacagagaccccatcactcctcca 572

                                                                       
Query: 122 tcatgtattgtcgctgaggccatttcaggtttaactagaatttgatttccttgatcaaga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tcatgtattgtcgctgaggccatttcaggtttaactagaatttgatttccttgatcaaga 512

                                                                       
Query: 182 attctaggaaaattactcaactccacttctaggaacccaaggtcaggatatccttgctaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 attctaggaaaattactcaactccacttctaggaacccaaggtcaggatatccttgctaa 452

                                                                       
Query: 242 cttatctcaacctgtttgtgctggaaccccctctggctaactgcttatcttagcttctac 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cttatctcaacctgtttgtgctggaaccccctctggctaactgcttatcttagcttctac 392

                                                                       
Query: 302 tagagactgcttgtttctgtgaggattctactttggttgccagatgtaaaaatctggagc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tagagactgcttgtttctgtgaggattctactttggttgccagatgtaaaaatctggagc 332

                                                                       
Query: 362 tagggcactcagtgccctcggcagctcagctcactctccagtgtacgtattgaagagaga 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tagggcactcagtgccctcggcagctcagctcactctccagtgtacgtattgaagagaga 272

                                                                       
Query: 422 ctgtggggtagagttatcgtcctatgaacctctgtacgctaatcctgatttttgctggaa 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctgtggggtagagttatcgtcctatgaacctctgtacgctaatcctgatttttgctggaa 212

                  
Query: 482 atagacc 488
           |||||||
Sbjct: 211 atagacc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 889
Length adjustment: 10
Effective length of query: 478
Effective length of database: 879
Effective search space:   420162
Effective search space used:   420162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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