BAC Information

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BAC

Clone NameMSMg01-448C21
Chromosome4 (Build37)
Map Location 57,847,179 - 57,847,325
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2, LOC100041513
Downstream geneAkap2, D630039A03Rik, Txn1, Txndc8, Svep1, Musk, Edg2, LOC675306, LOC433711, Olfr267, AI314180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448C21.T7 (MSMg01no448_c21.b1)MSMg01-448C21.TJ (MSMg01no448_c21.g1)
ACCAG536455AG536456
length813793
length of high quality
(start - end)
---159 (79 - 237)
definitionCHROMAT_FILE: MSMg01no448_c21.b1 PHD_FILE: MSMg01no448_c21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:21 2005CHROMAT_FILE: MSMg01no448_c21.g1 PHD_FILE: MSMg01no448_c21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTTCGCTCCGCTATACGACTCCCATACTCCGACCACCGCGGNATTCA
AGCCAGTCCCCCCTACAGAGTGAGTTCCGAAATAGCCATAGCCCTGTAGA
GAGACTATGTCTCACACAAACAAAGCAAGATAGATAGATGGATGGAGGGA
TAGATAGATAGATAGATTATATGTGTGCCCCGCATCCCCCTGNCCCCCCC
CCCCCCNCCCCCTCTCCCCCCCTTNCCTCTCCCCCCCTCCCCTCCCCCCT
CCCCCTCTCCTCCCCCCCCCCCCCCCCCTCTCCCCCCCCCTCCCTCCTTT
CCCCCTCCCCCCCCCCCTCCCCCCCCCCTCCCCCCCTCCCCCCCCCCCCN
TCCCCCCCCCCTCCCCCTTTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCT
CCCCCCCCCCCCCCTTCCCTCCCTCCCCCCCCCTTTCCCCCCCCCTTCCC
CCCCTTCCCCTTCCTTTCCCCCTCCCCCCCCCCCCTTTTCCCCCCCCCCC
CCCCCTTTCCTCCTCCCCCCTCCCCCCTTCCTCTTCCCCCCCTCCTCCCT
TTCCCCCTTTCCCTTTTCCCTCCCTCCCTCTTTCCCTTCTCCCCCCCCCT
CCCCCCCACCTCCCCCCTCTTCCCCCCCCCACCTCCCTCCATCCCCCCTA
TTCTCCCCCCCCTCCCCCCCCCCCCTCCCTTTCCTTCTCCCCCCCCCCCC
CCCCTTTTTCCCCCCTCCTCTCCCCTCCTTCCCCCCCCCCCCCCCCCATC
CCTTTCCCTCCCCCATTCCTCTCCCCCCCCACCCTTCCCCCCCCCTTTCC
CCCCCCCCCCCCN
AACCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGATAGACTAGACTAGGAG
CCCCTCCCAAGAATGTCTGTTTGTCTTGTACACAGGTTCCAGTACAATAG
CTAAGAACTTGGAACAGCCAGGCTATTCCGGAAGTGGACCTCTCCCCAGA
CAGGCAGGACAGAGAAGGTGGGGGGTTGGGGGATCTNNNANNNGNNNNNT
GTTTTTTTTGTGTTTTGTTTTTTTGTTTTTGGGGGGGTTTTGTTGTGGGG
GCGGGCTGGGGGTTTTTTTTTTGTTGGGGGGGGNGGGGGGGGGGGGGTGT
GGTTTTTTTCTTCTCCTTCTGCGCGCTGCCCCCTTCTTCGCCTCTTTTTT
CCGCCCTTTTTGGGTTCTTCTTCCCGCCCTCTCTTTGTCCCTTTTTCGCC
CCGCTTTCTTCCCCCCGTGCGTGCGTTTTTTCTTTTTTCCCCCCTTTTTT
TCCTCCCTTTTTTTTGTTTTTGTGTGTTTTTTTTTCTCCCTCTCTCCCTT
CTCTTCCTCTTCTCTTGTTTTTTTTTTGCCCCCCTCGCCGTTCTCCCCTT
TTTTCTTCTCCCCTCTCCTTTTCTGTTTTTCCTCCTCTCTCTTTTTCTTC
TCGTCTCGCTTCTTCTTTCTTTTCTTCTTCCCGCCTGTTTGTTTTTCCTT
TGTTTTCCCTTTCCCTCTCCCTCTTCGCCTTTTCCCTTTTTTCCCTCCCC
GCTTTGTTGTTTTTTCCCCCTCCTCTTCCTCCCCTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_c21.g1 MSMg01no448_c21.g1 CHROMAT_FILE:
MSMg01no448_c21.g1 PHD_FILE: MSMg01no448_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:21 2005
         (159 letters)



>mm_chr4_57846968_57847526
          Length = 559

 Score =  277 bits (143), Expect = 3e-79
 Identities = 146/147 (99%)
 Strand = Plus / Minus

                                                                       
Query: 12  tagactaggagcccctcccaagaatgtctgtttgtcttgtacacaggttccagtacaata 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tagactaggagcccctcccaagaatgtctgtttgtcttgtacacaggttccagtacaata 299

                                                                       
Query: 72  gctaagaacttggaacagccaggctattccggaagtggacctctccccagacaggcagga 131
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 298 gctaagaacttggaacagccaggccattccggaagtggacctctccccagacaggcagga 239

                                      
Query: 132 cagagaaggtggggggttgggggatct 158
           |||||||||||||||||||||||||||
Sbjct: 238 cagagaaggtggggggttgggggatct 212


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)