BAC Information

Click to search

BAC

Clone NameMSMg01-448K13
Chromosome4 (Build37)
Map Location 88,357,229 - 88,357,605
singlet/doubletsinglet
Overlap genenone
Upstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835
Downstream geneKlhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448K13.T7 (MSMg01no448_k13.b1)MSMg01-448K13.TJ (MSMg01no448_k13.g1)
ACCAG536819AG536820
length7321,159
length of high quality
(start - end)
379 (66 - 444)---
definitionCHROMAT_FILE: MSMg01no448_k13.b1 PHD_FILE: MSMg01no448_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:00 2005CHROMAT_FILE: MSMg01no448_k13.g1 PHD_FILE: MSMg01no448_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGCCGCTATACGACTCCTAAATGCAGAGAATCCGCGGAATTCATG
GATTTTCCTAGAATCAACTCTAGTTCTGGCAGGAAGCGTCTCCAGAGAGA
AGGGAAGGGCTGAGTGCTCAAAGCAGGCTGAGCTCTAAATGACAGGAGCC
CCTGTGCTCTTCATTGTTCTCTTTTCTGAATGGGATAATAGACCTTTACA
TTGCTTTACACACTCGTATCTCCAGTGACTTAATTATGCTGGGAATATGT
TGGGACCTGAAAGATAGAGAAAACGAGGGTATTCTTGGAATAAAATAAGG
ATTGATTTTTTAAAAATTGTATTTTATGGTACACCGACTTTGCTTGTATC
AATATATGCACAATATGTGTGTGTGTCCCTGGAGCCCATGGAAGCCAATA
TAGGACATCAGATCCTCTGGAATTGGAGTTATAGATGGTTGCGAGCCACT
AAGTGGCTGCTGTTAATTGAACGCATGTCCTTTGGAAGAACACTCCATGT
CACCCTTAACCATTTCTCCAGTCTCATGAATTGTCTTACTTGCTGACCAT
CACGTCTGACCTATGTTTGATTAACATATCTTACGACCCTGTCATTTCTT
TACTACCATTATCTTTTCTGTCTGACTACATTATGTTTTACGAGCTATTC
CCTGAAACCATCCTTTCCCTGTTTCTTTACATCCGAATTGATCTTGAATT
TCCCATCCTCAACCTTTTCTCTACGCCTACTA
TCGGAGCAGGTGTGGTGTGGTCNAGGAGGAGGCCCGCGGGTTTCTCCAAT
CATCAGGGTGGCGCTGCTTGTTAGGGTTCCCCGGGTCAGCCGCTCTCCTA
ATTTAATGAGGAACACACCACAAGACTAACCAGCTATATCAGCACACCGA
CCCTGAAAAGCTACGGCATCCGATTGTGCCGTTAAGCGTACAGAAGGAAT
AGCGTTAATAGGACTCCACTTCCTCTCTGCTTCTCCGCGTGCCTGTTATT
CGAGATCACTCACCTTCTATCTGCGCGCTGTAGATTGACGTGGTGGGGAG
GAGGGCGCGCGGCCAGACGTTGTCGATCGTCCGCCGGCATGTGCGTATTT
ACAGAGAAACGTGACCGGGGGGCGCATAACACACCGTCGCCCCTCCCAGC
GCATAGTAGAAGAAAAAGAGTATTTCACCATCAACGCGGTGCCGTCCTGT
ACTTCTTGGTATCGTTTCTACATGGCTACACTTGAAGGCTTACTTGTGAC
GCCGCGCCCTACCCCTCACTTTCCATCGACCGTATCTGTTTGTTCTCCCG
CGCGTGTATATAACAAGGCTACGACGGGAAGAGGTAGTAAGTNTAGTAAT
TGTGGTTGCACTGTCTTTGCCGCCGCCCACATTATTATTCTCCCCCCCCG
AGTGGGACGCGAGAGGAGTACAGTTGTGATATTTGTACTGAATAAATGTT
TCTAGCGATCCACACACTTATATTAGGGCCCGGACAGAAGTGGCACGAGA
GATNGTAGAGCCGGACACGGTAGAACCTCACCACTTCGCGTCGCCACATC
ACGACATCCTGTTGTATAGAGGTTATTGTGAGGCGACCAGCCCAGCGGTA
CTAAGCGGCTCGTGTGTGCGTGTCACNTCACCTCGCCACGCACATAGTTG
AGTGGGCGGAGGTCTGAGAGACGTGGNANGATCTTATTTGTGGTATACTA
CGTCCGTGGCGGGGTCACGATTGGTATGTTGATACGCTGTTGAGATCGGG
CGACAGATAGCATCATATCACGCGTTAGCAGTGCTCTACGGCTGCCGCTT
TCGTGCTCGTGTCACGACAATTAACTGTATTCGTCACTCACTCCACCGCA
ATTGTGTGTAATCATTTGTGCCCCCGGCCACACTTACACCGCTGCTACAT
TATATAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_k13.b1 MSMg01no448_k13.b1 CHROMAT_FILE:
MSMg01no448_k13.b1 PHD_FILE: MSMg01no448_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:00 2005
         (379 letters)



>mm_chr4_88357029_88357808
          Length = 780

 Score =  706 bits (365), Expect = 0.0
 Identities = 374/377 (99%), Gaps = 1/377 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactctagttctggcaggaagcgtctccagagagaagggaagggctgagtgctcaaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aactctagttctggcaggaagcgtctccagagagaagggaagggctgagtgctcaaagca 518

                                                                       
Query: 61  ggctgagctctaaatgacaggagcccctgtgctcttcattgttctcttttctgaatggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ggctgagctctaaatgacaggagcccctgtgctcttcattgttctcttttctgaatggga 458

                                                                       
Query: 121 taatagacctttacattgctttacacactcgtatctccagtgacttaattatgctgggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 taatagacctttacattgctttacacactcgtatctccagtgacttaattatgctgggaa 398

                                                                       
Query: 181 tatgttgggacctgaaagatagagaaaacgagggtattcttggaataaaataaggattga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tatgttgggacctgaaagatagagaaaacgagggtattcttggaataaaataaggattga 338

                                                                       
Query: 241 ttttttaaaaattgtattttatg-gtacaccgactttgcttgtatcaatatatgcacaat 299
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttttttaaaaattgtattttatgtgtacaccgactttgcttgtatcaatatatgcacaat 278

                                                                       
Query: 300 atgtgtgtgtgtccctggagcccatggaagccaatataggacatcagatcctctggaatt 359
           ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 277 atgtgtgtgtgtccctggagcccatggaagccagtagaggacatcagatcctctggaatt 218

                            
Query: 360 ggagttatagatggttg 376
           |||||||||||||||||
Sbjct: 217 ggagttatagatggttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 780
Length adjustment: 9
Effective length of query: 370
Effective length of database: 771
Effective search space:   285270
Effective search space used:   285270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)