Query= MSMg01no448_m15.b1 MSMg01no448_m15.b1 CHROMAT_FILE:
MSMg01no448_m15.b1 PHD_FILE: MSMg01no448_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:11 2005
(502 letters)
>mm_chr4_24590313_24591214
Length = 902
Score = 911 bits (471), Expect = 0.0
Identities = 480/483 (99%)
Strand = Plus / Minus
Query: 1 gacaggaccatcataagggctgtctcaggcctattacgcagtcatgtttgtaatgttact 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 483 gacaggaccatcataagggctgtctcaggcctattatgcagtcatgtttgtaatgttact 424
Query: 61 ttacaatatgggaaacatttaatactgtgtttcttacaatccacaactatcctacaagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttacaatatgggaaacatttaatactgtgtttcttacaatccacaactatcctacaagtt 364
Query: 121 tatgtcaacttcacacaatactggaccttattaaaaagtagctggaaggtgatggcttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tatgtcaacttcacacaatactggaccttattaaaaagtagctggaaggtgatggcttta 304
Query: 181 tcttgaacccaagagaatatttacattgaagaattactccatttcttggtgccatatttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tcttgaacccaagagaatatttacattgaagaattactccatttcttggtgccatatttt 244
Query: 241 catgacatttcttttctacatattgatttttaaattttcttaattttttattaatcattc 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 243 catgacatttcttttctacatattgattttttaattttcttaattttttattaatcattc 184
Query: 301 ctgtcgtttacacctcaaatgatatctctacatattgtttaaatgataaaatttaccaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ctgtcgtttacacctcaaatgatatctctacatattgtttaaatgataaaatttaccaag 124
Query: 361 cattttcacatgttattgtattcataatcttcttgagaatcaggtgacttcggaaatatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cattttcacatgttattgtattcataatcttcttgagaatcaggtgacttcggaaatatc 64
Query: 421 ccagtgtacagatgctgacactgccttggtggttttcttaaatgcacagatacatcgtta 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 63 ccagtgtacagatgctgacactgccttggtggttttctaaaatgcacagatacatcgtta 4
Query: 481 cag 483
|||
Sbjct: 3 cag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no448_m15.g1 MSMg01no448_m15.g1 CHROMAT_FILE:
MSMg01no448_m15.g1 PHD_FILE: MSMg01no448_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:11 2005
(392 letters)
>mm_chr4_24435915_24436706
Length = 792
Score = 685 bits (354), Expect = 0.0
Identities = 387/408 (94%), Gaps = 16/408 (3%)
Strand = Plus / Plus
Query: 1 cacacattaaggagggcaatccactttactgagtctactaatttaaatgttaacttcaga 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 185 cacacattaaggagggcaatccactttactgagtctactaatttaaatgttaacttgaga 244
Query: 61 aaatttaaaagtatgtatccagtataacatttaatctgctatctggggatttgtgcctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aaatttaaaagtatgtatccagtataacatttaatctgctatctggggatttgtgcctga 304
Query: 121 ttaagttgacacaacaaacacatattttgtattatttatgtatttgtgtgtgtgtgt--- 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttaagttgacacaacaaacacatattttgtattatttatgtatttgtgtgtgtgtgtgtg 364
Query: 178 -------------acagatagtagaatgaggaagaatcctgaagtaatgatttccctaat 224
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgtgtgtgtgtgtacagatagtagaatgaggaagaatcctgaagtaatgatttccctaat 424
Query: 225 acgttatgaaatgaaatgtttagaatgtaaaagattgtagtaaatcatcttttatgtagg 284
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 425 acgttgtgaaatgaaatgagcagaatgtaaaagattgtagtaaatcatcttttatgtagg 484
Query: 285 aaaccagagaaaagggtgtgtgagcgcatgtgctggtgtactcaaagaaatactggaatg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaaccagagaaaagggtgtgtgagcgcatgtgctggtgtactcaaagaaatactggaatg 544
Query: 345 acaagaagccatgagccttggtgaattaaaaccataaattgctgggtg 392
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 acaagaagccatgagccttggtgaattaaaaccataaattgctgggtg 592
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space: 299889
Effective search space used: 299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
