BAC Information

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BAC

Clone NameMSMg01-448P21
Chromosome4 (Build37)
Map Location 67,978,414 - 67,979,032
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039379, Hmgb1-rs18, LOC433715, Tcp1-ps1
Downstream geneDbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448P21.T7 (MSMg01no448_p21.b1)MSMg01-448P21.TJ (MSMg01no448_p21.g1)
ACCAG537073AG537074
length723793
length of high quality
(start - end)		619 (76 - 694)---
definitionCHROMAT_FILE: MSMg01no448_p21.b1 PHD_FILE: MSMg01no448_p21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:27 2005CHROMAT_FILE: MSMg01no448_p21.g1 PHD_FILE: MSMg01no448_p21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGGTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAT
CCGCGGAATTCATTGTGTTTTCCAGATAGAGAGAAATCTACTCAAACTGG
ATTTTTACACCCCATCTATATTTTGTTGATTGTCTACTTAAATTAACTTC
CTCTAATGAGGCGCACATTCAATGACTATATCTGTAATTTACTGGCTGTA
AAATTAGTTAGTCTGGATAATTCATCCCATGGGTGACAAGGGTGAGATCA
CAGTGAACCTGCAGGTGAGAAAGAAGAATTCTAATATATCCACTAAATTG
ATGTGGTGGCTACATGGAGATCACTTACAACCTAACCTCTAGGTGACCCC
ATTTAGTATCTTATCCACCTTCATGGTCAAGTAAGCCCATTGTAATCTGT
CTGAATCAGGTGTGCTATTGATTATGTGAAACTACCAGATACCAATCTTG
ATGCAAAATAACTATGACAAAAGGACATTATTGGTAAAAATCTATAACTA
AAGATAAAACAAAAATTATCTAACTTAGGCAAAGGAGGTGATGAGCAGTG
AGGATATAAGATATGCCTGTAATTAAAATACTACTTTATTGTACCCATTT
AATAAGTAACTTATTCAAGAAGGTTATCCTCATAACTTCTTTCCTCATAA
CTCTTAAAAATGTTTTGGATTGGATTATTATTTATTTTTTGACAAAAGTA
AAAGTATTCACAAATATTTTCCC

ACATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACTCCGAGCTTTGCATATGATCGACTACTT
GGGGAGGGGTAATCATTCGCTTGCGTTTGTTTTGTTGTTTTGGTTGGGTT
TCCNNNNNTGNNNNNTNTTGCTCCTGCCTNNNTTNTTGCTCCCTCCCCCN
CCNCCCCTTGCCCCCCCTTCCCCCCCTTCCCCGCCCCCCCTCNNCCCCTT
CCCCGTCCCCCCCGCGCGNCGGCCCGCCCCCTCCCCCCCCCCCCTTGCCC
CTCCCCCGCCCCCCCGTTTTCTTTTCCCCCCCCGCCTCCNNTGCCTCCCC
CCCGCTCCCCCCTCCCCCCCCCCCCCCCCGCCCCTTCTTCCTCTCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCTTCCCCCCCCCCCCCTTCCCCCCCCC
CCCCCCCTCCCCCCCCTCCCCCCCCCTCCTCCCCCCCCCCCCCCCCCCCT
CGTTTCTCCCCCCCCCCCCCCCCCCCCTCTCCTCTCCCCCCCCCCCCCCT
CCCCCCTCTCTCCCCCTCTCCCCCCGTCTTCCCCCCCCCCCCCCCCCCCC
CTTCCCCCTTTCCCCCCCCCCCCCCCTCTCCCCCCCCCCTTCCCCTCCCC
CCCNCCCCCCCCCCCCCCTCCCCCCTTCCCCCCCCCCCCCCCTCCCCCTC
CCCCCCCCCCCCCCCCTCCCCCCCCCCCCTCTCCCCCCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_p21.b1 MSMg01no448_p21.b1 CHROMAT_FILE:
MSMg01no448_p21.b1 PHD_FILE: MSMg01no448_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:27 2005
         (619 letters)



>mm_chr4_67978214_67979232
          Length = 1019

 Score = 1174 bits (607), Expect = 0.0
 Identities = 616/619 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagagagaaatctactcaaactggatttttacaccccatctatattttgttgattgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagagagaaatctactcaaactggatttttacaccccatctatattttgttgattgtct 260

                                                                       
Query: 61  acttaaattaacttcctctaatgaggcgcacattcaatgactatatctgtaatttactgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttaaattaacttcctctaatgaggcgcacattcaatgactatatctgtaatttactgg 320

                                                                       
Query: 121 ctgtaaaattagttagtctggataattcatcccatgggtgacaagggtgagatcacagtg 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgaaattagttagtctggataattcatcccatgggtgacaagggtgagatcacagtg 380

                                                                       
Query: 181 aacctgcaggtgagaaagaagaattctaatatatccactaaattgatgtggtggctacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacctgcaggtgagaaagaagaattctaatatatccactaaattgatgtggtggctacat 440

                                                                       
Query: 241 ggagatcacttacaacctaacctctaggtgaccccatttagtatcttatccaccttcatg 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagatcacatacaacctaacctctaggtgaccccatttagtatcttatccaccttcatg 500

                                                                       
Query: 301 gtcaagtaagcccattgtaatctgtctgaatcaggtgtgctattgattatgtgaaactac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcaagtaagcccattgtaatctgtctgaatcaggtgtgctattgattatgtgaaactac 560

                                                                       
Query: 361 cagataccaatcttgatgcaaaataactatgacaaaaggacattattggtaaaaatctat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagataccaatcttgatgcaaaataactatgacaaaaggacattattggtaaaaatctat 620

                                                                       
Query: 421 aactaaagataaaacaaaaattatctaacttaggcaaaggaggtgatgagcagtgaggat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aactaaagataaaacaaaaattatctaacttaggcaaaggaggtgatgagcagtgaggat 680

                                                                       
Query: 481 ataagatatgcctgtaattaaaatactactttattgtacccatttaataagtaacttatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataagatatgcctgtaattaaaatactactttattgtacccatttaataagtaacttatt 740

                                                                       
Query: 541 caagaaggttatcctcataacttctttcctcataactcttaaaaatgttttggattggat 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 caagaaggttatcctcataacttctttcctcataactcttaaaaatgttttgaattggat 800

                              
Query: 601 tattatttattttttgaca 619
           |||||||||||||||||||
Sbjct: 801 tattatttattttttgaca 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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