BAC Information

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BAC

Clone NameMSMg01-449A05
Chromosome4 (Build37)
Map Location 17,966,563 - 17,966,853
singlet/doubletsinglet
Overlap geneMmp16
Upstream geneLOC100040173
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449A05.T7 (MSMg01no449_a05.b1)MSMg01-449A05.TJ (MSMg01no449_a05.g1)
ACCAG537089AG537090
length809673
length of high quality
(start - end)
284 (81 - 364)---
definitionCHROMAT_FILE: MSMg01no449_a05.b1 PHD_FILE: MSMg01no449_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:29 2005CHROMAT_FILE: MSMg01no449_a05.g1 PHD_FILE: MSMg01no449_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAATA
CACGCGGAATTCCAACTTTTNTTTTCGCACATAAAGCATAATTTAATGTT
GAAACTTTCACTTGTTTTTTTGGAACCGTAGTTTTAGCTTAAATCATTAT
TCTATAATGAGAACTGCACAGTGGTAAATGCTTTCCAGAGCTGTCTCAAC
CTGTAGATATCTAGATCTAGGCAATCATTTTACATACGAATTCAGTAAAG
TATTGAGAACTTTTCTGCAGGTAAAAAAATATGGCAGAAGAATACACACC
AAAAACAAAAATATCACATGTGTGTTTGAGATTTTTTTGAGGGAGGAAGA
TGGAAGGGTGGAGNNNNNNNNNNTNTNNNTNCNCNCNNNTTTTTTTTTTT
TTTTTTTTTTNNTTTTTTTTTCGTTTTTTTTTTNCTTTTTTTTTTTTTTT
TTTTCTTCTTTTCCTTCTTCCCGTGTCTTCCCTTTTCTTTTTTTTCTCTT
TCTCCTTTTTTTTCGCGCCTCTTCGTTCTTCCTTTTTCCTTTCCTTTTTC
CCTCCCGCCCCTCCTTTNCTTATTTTTTTTTCTCTTCCTTTCTTCCTTTT
CTCTCGGTTTTCTTTTTCCTTCCCCTTCCTTTTCTCCTTTTTTCCCTTCC
TTCTTTCCTCTTTGCTTTTCCTTCTTTTTTCTCTTCTTCTTTCTCCCTTT
CCCTTTATTTTCTTTTTCTTTTTTTTTTCTCTTATTTCTCTCCCTCGCCC
ATTGTTTCGAATATATTTTTTTTTTGTCCTCTAACCACATATTTTCCTAT
CACTTTTCN
CCATATATGNTANCCTGNNGCCCCTGCTTCAAAATAGTGAACTAANAAGA
TTCCAAAATACGTCAAAATTAACTCCTTTAATAAAAAAAAATCTCTTCCT
CNNAACAAAACCCAAAAAATCAANTGATATCCCANAAATGTTNCCATTCT
CAGCTTCCTAAGGAAGTTGGACGGGGGTGGGGGAAGGGGGGCGGGGTGGG
GGGGTGGGGGGGGGGGGCTNNNTTTTCCCTCNAATTTTATTTGCGGAAGA
GGGGAGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGG
GGGTGGGGGGNTTTTTCTAAATTNAATAAAAAATATGAACAAAAAAAAAA
AAAAAGAAGAGGGCGGGNNNNNNNNNNTTTNTTTTTAAAATTTGGGGGCT
CCCCNNNNNNNNNTNNTNNNNTNNNNTNTNNNNNNTTTNNANAANANNAA
AATTTATTTTGGAAATATAAGGGCGGGGGGNNNNNNNTNTNTTAAANTAA
NNNTTTTNNNNNTTTTTTNNNTNNNNNNNTTAAATTAAAAAAAATAAATT
TNTNTAAATNNATTTATTNAATTTTTTTTAAAAANNNNNNATANAATAAT
NTATTTTNNNAAATATTTTTANNNNATTATAAATNANAATATAANAATTT
TTATTTTTTAATTAAAATTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_a05.b1 MSMg01no449_a05.b1 CHROMAT_FILE:
MSMg01no449_a05.b1 PHD_FILE: MSMg01no449_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:29 2005
         (284 letters)



>mm_chr4_17966363_17967046
          Length = 684

 Score =  472 bits (244), Expect = e-137
 Identities = 275/298 (92%), Gaps = 22/298 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaagcataatttaatgttgaaactttcacttgtttttttggaaccgtagttttagctt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 ataaagcataatttaatgttgaaactttcacttgtctttttggaaccgtagttttagctt 260

                                                                       
Query: 61  aaatcattattctataatgagaactgcacagtggtaaatgctttccagagctgtctcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatcattattctataatgagaactgcacagtggtaaatgctttccagagctgtctcaac 320

                                                                       
Query: 121 ctgtagatatctagatctaggcaatcattttacatacgaattcagtaaagtattgagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtagatatctagatctaggcaatcattttacatacgaattcagtaaagtattgagaac 380

                                                                       
Query: 181 ttttctgcaggtaaaaaaatatggcagaagaatacacaccaaaaacaaa--------aat 232
           |||||||||||||||||||||||||||||||||||||||||||||||||        |||
Sbjct: 381 ttttctgcaggtaaaaaaatatggcagaagaatacacaccaaaaacaaatgaacaaaaat 440

                                                                     
Query: 233 atcacatgtgtgtttgagatttttttg-------agggaggaagatggaagggtggag 283
           |||||||||||||||||||       |       ||||||||||||||||||||||||
Sbjct: 441 atcacatgtgtgtttgaga-------ggggggagagggaggaagatggaagggtggag 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)