BAC Information

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BAC

Clone NameMSMg01-449F07
Chromosome4 (Build37)
Map Location 155,204,810 - 155,390,814
singlet/doubletdoublet
Overlap geneAurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2, B3galt6, Sdf4, LOC100043436, Tnfrsf4
Upstream geneB230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2
Downstream geneTnfrsf18, Ttll10, 9430015G10Rik, EG667357, Agrn, LOC100038882, AW011738, LOC677185, 2310042D19Rik, Plekhn1, Klhl17, LOC100042378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449F07.T7 (MSMg01no449_f07.b1)MSMg01-449F07.TJ (MSMg01no449_f07.g1)
ACCAG537330AG537331
length744761
length of high quality
(start - end)
245 (78 - 322)198 (334 - 531)
definitionCHROMAT_FILE: MSMg01no449_f07.b1 PHD_FILE: MSMg01no449_f07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:55 2005CHROMAT_FILE: MSMg01no449_f07.g1 PHD_FILE: MSMg01no449_f07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,390,570 - 155,390,814)(155,204,810 - 155,205,007)
sequence
NGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCG
CGGAATTCCATACCCTTCCTCACAATGGAGTACATGTGACCAAGTGTAGG
TCTCTGAGTGGACCTTCATTTTGGCCCCAAACCCTCCCCAACCAGAATAG
GAGGCCACCTCAGCCCTAGTGCCAGTCACAGACTCACAGTTGCTAGCATG
TTTATTAGGAGCACCACCAGGCAGGTAGTATGCATAGCATACATAGGAAA
GCCCAGAGCCAGCCCAGCACCTAGAACGGTGTGGAGGGTACTGGCAGGCA
TCAGGATATGGGTTGTCCGTGCTTCTTTTTATCCACTCCTGTACTAATGC
TCAGATCTTGGCCAGAGTAAAGTGTGTGTCTGTCTGTTCCTCCTGGATCG
GGGTCCTGAAGCTGTTTCCCCCTATGAGAAGCACAGAAGGAAAGAGCAGT
GAGGAGCTATGGCTCATCGTGAAGGAGGTAGGCTTTACTGAGCCCAATGT
GATACTCACAACAAGGTTTGGGAGTGTTAGGCAATCTCCATGCCTTCCGG
AGCATGTACAAGGCCAGAATGACAGTCTAGGGAGCCAGCAGGCCCTGTTC
CAGGCCTAGGAGATAAGCAAATGCCAGGGCCCATGAGGAGAGGCCATCTG
AGTAAAATTCTTTCTTTCTTGAAGTCCTCTCCTAACCCTCCCCTGCGCCC
GGGTTCCCTTTACCCCCCGCTATTCTTCACAGTCGGGTGTGTAA
NTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAACAGGG
AGGTGACACTATAGAAGTTACAGAGAAAGTCACTTCCTTAAATGTGGAAG
AAGAGAAATGACTCCATGTGTGCTGTGCCATATGCAGGTGCACATTGTGC
CTCCCCTCTCGAAACATCATTAGAAAAGACAAATATCTCCAGCATCCCCT
CTCGAAGGTAGGGTACACGCAACATCACTTTGTGACCTCAGTTACACAGC
TGGGACGACTGCCTGCAATTTCTGCCCTCTTATTGGTTTATGTAACTTTA
GCTAGGTTAATGCCTGAGAATGATANATTTGTTCACTTTGTGTTAAGAAT
CCACAGAAATCCCTCATGCGAGGCATACGTAGTTTCTCAAATGAAGGAGA
ACCCTAGTCTTGCACCCCTGCCCATCGGAGCCAGCAGGACTTTCTGGTCC
ACACTGAGGTGCAGTGGATTGCTAGGCTCTTGCCAAGGAAAGCAGCAGCC
GTATTCTGAAGAAGCTGCTTTTAAGTTTTGGGATACAAATTAACGTGTGT
GTGAGGATATTTAAATTTTTTCCTCAGGGGGCTGGTGAGATGGCTCAGTG
GGTAAGAGCACCCGTACTGCTCTTCCGAATGTCCGAAGATTAAATTCCCG
TTAAGCACATGGTGGCGTTATTTATCTTTTTGAATTGATATTCTGATTTC
CCCCTTCTTGGATTGTCTTGATGACCTGTTACTTGCTTTTTTTAAATTAT
ATGTTCATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_f07.b1 MSMg01no449_f07.b1 CHROMAT_FILE:
MSMg01no449_f07.b1 PHD_FILE: MSMg01no449_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:55 2005
         (245 letters)



>mm_chr4_155390370_155391014
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagtacatgtgaccaagtgtaggtctctgagtggaccttcattttggccccaaaccctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagtacatgtgaccaagtgtaggtctctgagtggaccttcattttggccccaaaccctcc 386

                                                                       
Query: 61  ccaaccagaataggaggccacctcagccctagtgccagtcacagactcacagttgctagc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 385 ccaaccagaataggaggccacctcagccctagtgccagtcacagactcacagctgctagc 326

                                                                       
Query: 121 atgtttattaggagcaccaccaggcaggtagtatgcatagcatacataggaaagcccaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtttattaggagcaccaccaggcaggtagtatgcatagcatacataggaaagcccaga 266

                                                                       
Query: 181 gccagcccagcacctagaacggtgtggagggtactggcaggcatcaggatatgggttgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gccagcccagcacctagaacggtgtggagggtactggcaggcatcaggatatgggttgtc 206

                
Query: 241 cgtgc 245
           |||||
Sbjct: 205 cgtgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no449_f07.g1 MSMg01no449_f07.g1 CHROMAT_FILE:
MSMg01no449_f07.g1 PHD_FILE: MSMg01no449_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:55 2005
         (198 letters)



>mm_chr4_155204610_155205207
          Length = 598

 Score =  375 bits (194), Expect = e-109
 Identities = 197/198 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactttgtgttaagaatccacagaaatccctcatgcgaggcatacgtagtttctcaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactttgtgttaagaatccacagaaatccctcatgcgaggcatacgtagtttctcaaatg 260

                                                                       
Query: 61  aaggagaaccctagtcttgcacccctgcccatcggagccagcaggactttctggtccaca 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 aaggagaaccctagtcttgcacccctgtccatcggagccagcaggactttctggtccaca 320

                                                                       
Query: 121 ctgaggtgcagtggattgctaggctcttgccaaggaaagcagcagccgtattctgaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaggtgcagtggattgctaggctcttgccaaggaaagcagcagccgtattctgaagaa 380

                             
Query: 181 gctgcttttaagttttgg 198
           ||||||||||||||||||
Sbjct: 381 gctgcttttaagttttgg 398


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)