BAC Information

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BAC

Clone NameMSMg01-449J13
Chromosome4 (Build37)
Map Location 131,632,645 - 131,633,191
singlet/doubletsinglet
Overlap genenone
Upstream geneGm831, EG664832, LOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480
Downstream geneLOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449J13.T7 (MSMg01no449_j13.b1)MSMg01-449J13.TJ (MSMg01no449_j13.g1)
ACCAG537530AG537531
length739732
length of high quality
(start - end)
547 (81 - 627)79 (225 - 303)
definitionCHROMAT_FILE: MSMg01no449_j13.b1 PHD_FILE: MSMg01no449_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:15 2005CHROMAT_FILE: MSMg01no449_j13.g1 PHD_FILE: MSMg01no449_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAAGG
CGCGGAATTCTTTAATTTTGCCTNCAAAAACAAGGGCTCCCGGGCCAACT
GCCTCCTTTCCTGGGACTCAATCTAAGGGCTGCCAATAGGAAAACCCCAG
CCCCGGGTTGGACAGAGTTATTCTAAAGGGCTGAAGAGGCCCCACCTCTC
AGCTCTCCGGCATGAGGCTCCAGCTCTGTTGGGTTTTTGCTGCTAGTGGG
TGACTCAGCATCGCCGGCGCCTGGCCCTGCCTGATAAGCCTGTGTGCCTA
TGTGTGAGTTTGTACTTGGGAATACATCGGTGTTAGTGTTTGTGAACTTC
CGTGTGGGCTGTCAGCATACTGGGACTTGGGGGTTGGGCCGGGAGAGGGT
GAGCGTGAGTTACCTACGGAGGGTGACTATTCGTGCCCTAGAATCAGAAT
GCCTGGCCCTGAGCTATCTGCACCTAGGGAATTTTGACCTGCCCCTGGAA
CCTCTGTGCTCAGGCACCTGTGTGTTTCCCGTTGAAGCACTGGGTGAACA
ACCAATGCAGTCTTGGAAAGCCTGTGGAGGGATATAGGTCACTGCCTCCG
CCAGGAATTCTTAGCGTCCCTCTTGGGCCCTACCTGAGAGGCTCCGTGGG
AGAGGGGACATCCTGAATGGTAAGTTCACATTTCCCTCACCGCTAGTATT
TTCTATCCCTCTGCCCATTTTTTTTTTTACATCATAAAA
NCCCCCATGAAGTGGGAGGCCTGGGGGCGCCTGGTTCCGACCCGAGGNGA
ACNANAGAATTTACAGCACCGGAGNANGAAAAAGGCNGGCCCCAACNCCA
GAGAACACCTGCCCCCGNCNCCCAGNGCNGGGANNAGAAGAGGNGNCCAN
ACTGAGCTTNAAGGGCNANAACNAAACANNGGGAAAAAANAAGAAANAGG
NNAGGGNNNAACCCCNNANAGAANAAGGAAAACGGGNNAATATTATTTCT
GGGTATATGTTAAGATGTAACAAGGACCATTTTATTTAATAGTTAATCAC
CGGNTATTTTTTTTTTAGANGNANNNGCNNGNNNGCNNNNNNNGANNGGG
GGCCGCCCCCAGGCNNCCGAGACAGGGNNCCNCGGNGNAGCCCGGGCGGN
CCCGCCCCCCACTCTGAAGACCAGGCNGGCCCCAAACNCAGAAAACCGCC
AGCCNCGGCCACCCAAGAGCCGGAACCAAAGGCGCGCGCCACCAGCGCCA
GCAGGAAAANNNCCACACAGCCCCCGAGACGAAAAAACACCCCCAAGACA
CCAGGGGGAGACCCAGAAACAGGCCGGCCCACGAACCCCCCGCCCCGGCC
CAGGAACACACACACACACACACACCAAACAACACAGCACGCACACACGC
GTTTTTTTATTTTTAAAGCACCCTCCCCAAATTTCCCATATAAATAAACC
CCCTAATCCATTTTCAATAAGAGCCACCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_j13.b1 MSMg01no449_j13.b1 CHROMAT_FILE:
MSMg01no449_j13.b1 PHD_FILE: MSMg01no449_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:15 2005
         (547 letters)



>mm_chr4_131632445_131633391
          Length = 947

 Score = 1004 bits (519), Expect = 0.0
 Identities = 540/547 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagggctcccgggccaactgcctcctttcctgggactcaatctaagggctgccaatagg 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 caagggctcccgggccaactgcctcctttcccgggactcaatctaagggctgccaatagg 260

                                                                       
Query: 61  aaaaccccagccccgggttggacagagttattctaaagggctgaagaggccccacctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaccccagccccgggttggacagagttattctaaagggctgaagaggccccacctctc 320

                                                                       
Query: 121 agctctccggcatgaggctccagctctgttgggtttttgctgctagtgggtgactcagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctctccggcatgaggctccagctctgttgggtttttgctgctagtgggtgactcagca 380

                                                                       
Query: 181 tcgccggcgcctggccctgcctgataagcctgtgtgcctatgtgtgagtttgtacttggg 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgccggcgcctggccctgcctgataagcctgtgtgcctatgtgtgagtttgtacttggg 440

                                                                       
Query: 241 aatacatcggtgttagtgtttgtgaacttccgtgtgggctgtcagcatactgggacttgg 300
           |||||||| | |  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatacatctgagaaagtgtttgtgaacttccgtgtgggctgtcagcatactgggacttgg 500

                                                                       
Query: 301 gggttgggccgggagagggtgagcgtgagttacctacggagggtgactattcgtgcccta 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggttgggccgggggagggtgagcgtgagttacctacggagggtgactattcgtgcccta 560

                                                                       
Query: 361 gaatcagaatgcctggccctgagctatctgcacctagggaattttgacctgcccctggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaatcagaatgcctggccctgagctatctgcacctagggaattttgacctgcccctggaa 620

                                                                       
Query: 421 cctctgtgctcaggcacctgtgtgtttcccgttgaagcactgggtgaacaaccaatgcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctctgtgctcaggcacctgtgtgtttcccgttgaagcactgggtgaacaaccaatgcag 680

                                                                       
Query: 481 tcttggaaagcctgtggagggatataggtcactgcctccgccaggaattcttagcgtccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcttggaaagcctgtggagggatataggtcactgcctccgccaggaattcttagcgtccc 740

                  
Query: 541 tcttggg 547
           |||||||
Sbjct: 741 tcttggg 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)