Query= MSMg01no449_p15.b1 MSMg01no449_p15.b1 CHROMAT_FILE:
MSMg01no449_p15.b1 PHD_FILE: MSMg01no449_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:44 2005
(531 letters)
>mm_chr4_48092537_48093467
Length = 931
Score = 1013 bits (524), Expect = 0.0
Identities = 529/531 (99%)
Strand = Plus / Plus
Query: 1 ccagctggcaggaggtatcgatctccacttcaattcactgaataaataatggttgccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagctggcaggaggtatcgatctccacttcaattcactgaataaataatggttgccata 260
Query: 61 gttattgagcagccgccactggctggagagcagagaaaactccatgctcccttctgtgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttattgagcagccgccactggctggagagcagagaaaactccatgctcccttctgtgag 320
Query: 121 tttggccaagagaaagtctagctctaaggttccacaatcaattgacagccccgcccccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttggccaagagaaagtctagctctaaggttccacaatcaattgacagccccgcccccaa 380
Query: 181 ccaccacatcacacccgacaaattgctcagtttcttcatcctgataatgagcatggaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaccacatcacacccgacaaattgctcagtttcttcatcctgataatgagcatggaatc 440
Query: 241 ttggatgttctgtgatacaggaggccctggaaggatggaaggacctcagttaatggactg 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggatgttctgtgagacaggaggccctggaaggatggaaggacctcagttaatggactg 500
Query: 301 gcatttgattgtgagagacacctcctcttcccagcttgtaaatcagatttaatgtgtctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcatttgattgtgagagacacctcctcttcccagcttgtaaatcagatttaatgtgtctc 560
Query: 361 aatgctaatagaattaaatatcggcaagttggtgtttggttgtgttgtccatatgacagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgctaatagaattaaatatcggcaagttggtgtttggttgtgttgtccatatgacagg 620
Query: 421 attttatgaagggccatctcttatcttgtactgttttaacagtattctccanatagcact 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 attttatgaagggccatctcttatcttgtactgttttaacagtattctccaaatagcact 680
Query: 481 aacccagacattttaagagaaaggtaaaagagccattcagttatttcacaa 531
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacccagacattttaagagaaaggtaaaagagccattcagttatttcacaa 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_p15.g1 MSMg01no449_p15.g1 CHROMAT_FILE:
MSMg01no449_p15.g1 PHD_FILE: MSMg01no449_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:44 2005
(522 letters)
>mm_chr4_48208992_48209913
Length = 922
Score = 955 bits (494), Expect = 0.0
Identities = 515/528 (97%), Gaps = 12/528 (2%)
Strand = Plus / Minus
Query: 1 catcacggacctgacccgactgacacagccccaggagaggtaggactcctgtgttgccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 catcacggacctgacccgactgacacagccccaggagaggtaggactcctgtgttgccag 663
Query: 61 tggggactcttctgtggagaccgcctcagaggggacttgagctagagttgcggctcctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tggggactcttctgtggagaccgcctcagaggggacttgagctagagttgcggctcctga 603
Query: 121 tacctctctgtagaaatttggagctgactaagacacatttaggttatgcgcctttaaagt 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tacctctctgaagaaatttggagctgactaagacacatttaggttatgcgcctttaaagt 543
Query: 181 tacttcttaaaatgccaggtctccagaaaagctgtaaagtgctgtgtctggtttctcatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tacttcttaaaatgccaggtctccagaaaagctgtaaagtgctgtgtctggtttctcatc 483
Query: 241 atcta---ttttttt---gtgactgggtatgacgctgtggggcgtagctatacagggtta 294
||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 atctaaac------tggggtgactgggtatgacgctgtggggcgtagctatacagggtta 429
Query: 295 aatagagaagtgagaacataggatttgggaaagtagttgagaaagcagatcagtggactc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aatagagaagtgagaacataggatttgggaaagtagttgagaaagcagatcagtggactc 369
Query: 355 ccgttcaagcttgcttttgctgctgaatccgtgccctcgctgtcctaaagcactgctctg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ccgttcaagcttgcttttgctgctgaatccgtgccctcgctgtcctaaagcactgctctg 309
Query: 415 tcaccttgtccatccatgctaagggccttcatagtcgcactgttgatagtgttcaaacac 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tcaccttgtccatccatgctaagggccttcatagtcgcactgttgatagtgttcaaacac 249
Query: 475 agggctcaggacagctttcccagtggatagctgaatgtttgacaagta 522
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 agggctcaggacagctttcccagtggatagctgaatgtttgacaagta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
