BAC Information

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BAC

Clone NameMSMg01-450B18
Chromosome4 (Build37)
Map Location 118,537,151 - 118,651,979
singlet/doubletdoublet
Overlap geneOlfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1
Upstream geneSlc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1
Downstream geneLOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450B18.T7 (MSMg01no450_b18.b1)MSMg01-450B18.TJ (MSMg01no450_b18.g1)
ACCAG537918AG537919
length750762
length of high quality
(start - end)
464 (71 - 534)243 (75 - 317)
definitionCHROMAT_FILE: MSMg01no450_b18.b1 PHD_FILE: MSMg01no450_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:55 2005CHROMAT_FILE: MSMg01no450_b18.g1 PHD_FILE: MSMg01no450_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(118,651,517 - 118,651,979)(118,537,151 - 118,537,393)
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGAGATTTCGCTGTAGTACTAAGAAAGCAGGCTGAGTTTGGAC
AGTGGGCCTCACCGTGTTCCAGAACTGTGAATTTCCTTTCTCTCCCATTT
CCTTATTTGTACCACGGTGCTTGTTTGAATACAGAATGTTTCTCTTGACT
GTTTTTTTATTGATCTAATCGTTAACTTGTTTATAGAGACTTCCAGAGTC
TTCCCCATACATCTGTTTCCTGGGGGCAAGGCCAATTGTCTTATGCAGCA
TTTCCTAGAACCTGGTTGATCTTTCTGTACTTGGATTCTTGAGAGTTTTG
TTATAATACGAACCAGACTCTGGGATTAAATCAGAAGCCAGGGCCTAGGA
GCAGCATGGAGAGTTGGTTTAATTTTGGGAAGCAGGTCTTCATCTTCCTG
TGTGTCCAATTAACTTTAAATTTTTCTGGAATATTTGCCAGGGATGGCGG
TGCACACCTTTAACCTCATTACTTGGAACCATGCTCGGGGGATCTTTATG
AGTTTCATTCCCATCACGCATATATAGTGTTAGCCTATCTCAAAAACCGT
AATTTGTTCTTTTTCCTTAAACTACTCTTTCTAATTTTACCTAACATCAT
TCACCTATTATATGCTATGTACTCTGCATTTTGTTTTCCAACCCCTCTAA
CTATGTCTCCCGAACTCCGTTTTTGATTTTCTGCTATTCTCCTCGCCGTT

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTACTGGGAACAGAAATGGCCCGTTC
CCAATTCTCCTGGGAAGGCTAAGAGAGAAGGCAGGATCATAAAGTCACTG
CAGCTTGTACTACAAGGAAAAGGTTGACAAGTCTGAGACTCAGTTTGTTG
CGCAGGTTCATCACTCTCAGAAGACAAGCCTAGCCTGCTTGGAGACTCAG
CTGGCTGAACTGTCAGAAACCTTGGATATGTTCTGCATTCTTGGCTGCCT
TCAGTATCACATCTCGGTTATTTTTTTGTTTAGGGGTTTTCCTGGTTAGT
CTCTTCCACAAGAGCAAGAAGCAGCCATTCATTGACACCTAGTTTGACCC
ATGAGTGGTAAGTTGGCCACTAGTCTTGGACTTCCTGGTGGGATGCAGGA
ATCACATGAAGCTGAAGATCAGAAGTAGCCGGACCCCCCACCCTTTCAAC
TATGTAAATATCACCATATACTTGCTTCCCTGCCTCTCATTGCCTGTTCT
TCTTTCCTTCACCCTGGTCTACCTCACCCACATGCCCTTTATTCCTTCCT
GTTCCTCTTCCTTCCTTCTTTATACATTTACTAATTCCTGACAGTTTATT
TTCCTGTCTTGTTTTACGTTCGGCACTATATATTTAGATACACTTTTGTT
TCTGAGCTCACAGGTTCCTATCGTTAGGCTTGAACCCTTAGTCCTGGATA
TACTCTTAGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_b18.b1 MSMg01no450_b18.b1 CHROMAT_FILE:
MSMg01no450_b18.b1 PHD_FILE: MSMg01no450_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:55 2005
         (464 letters)



>mm_chr4_118651317_118652180
          Length = 864

 Score =  872 bits (451), Expect = 0.0
 Identities = 460/463 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtactaagaaagcaggctgagtttggacagtgggcctcaccgtgttccagaactgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tagtactaagaaagcaggctgagtttggacagtgggcctcaccgtgttccagaactgtga 604

                                                                       
Query: 61  atttcctttctctcccatttccttatttgtaccacggtgcttgtttgaatacagaatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 atttcctttctctcccatttccttatttgtaccacggtgcttgtttgaatacagaatgtt 544

                                                                       
Query: 121 tctcttgactgtttttttattgatctaatcgttaacttgtttatagagacttccagagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tctcttgactgtttttttattgatctaatcgttaacttgtttatagagacttccagagtc 484

                                                                       
Query: 181 ttccccatacatctgtttcctgggggcaaggccaattgtcttatgcagcatttcctagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttccccatacatctgtttcctgggggcaaggccaattgtcttatgcagcatttcctagaa 424

                                                                       
Query: 241 cctggttgatctttctgtacttggattcttgagagttttgttataatacgaaccagactc 300
           ||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 423 cctggttgagctttctgtacttggatccttgagagttttgttaaaatacgaaccagactc 364

                                                                       
Query: 301 tgggattaaatcagaagccagggcctaggagcagcatggagagttggtttaattttggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgggattaaatcagaagccagggcctaggagcagcatggagagttggtttaattttggga 304

                                                                       
Query: 361 agcaggtcttcatcttcctgtgtgtccaattaactttaaatttttctggaatatttgcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 agcaggtcttcatcttcctgtgtgtccaattaactttaaatttttctggaatatttgcca 244

                                                      
Query: 421 gggatggcggtgcacacctttaacctcattacttggaaccatg 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gggatggcggtgcacacctttaacctcattacttggaaccatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no450_b18.g1 MSMg01no450_b18.g1 CHROMAT_FILE:
MSMg01no450_b18.g1 PHD_FILE: MSMg01no450_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:55 2005
         (243 letters)



>mm_chr4_118536951_118537593
          Length = 643

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctactgggaacagaaatggcccgttcccaattctcctgggaaggctaagagagaaggcag 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctactgggaacagaaatggccctttcccaattctcctgggaaggctaagagagaaggcag 260

                                                                       
Query: 61  gatcataaagtcactgcagcttgtactacaaggaaaaggttgacaagtctgagactcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatcataaagtcactgcagcttgtactacaaggaaaaggttgacaagtctgagactcagt 320

                                                                       
Query: 121 ttgttgcgcaggttcatcactctcagaagacaagcctagcctgcttggagactcagctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgttgcgcaggttcatcactctcagaagacaagcctagcctgcttggagactcagctgg 380

                                                                       
Query: 181 ctgaactgtcagaaaccttggatatgttctgcattcttggctgccttcagtatcacatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaactgtcagaaaccttggatatgttctgcattcttggctgccttcagtatcacatct 440

              
Query: 241 cgg 243
           |||
Sbjct: 441 cgg 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)