Query= MSMg01no450_c21.b1 MSMg01no450_c21.b1 CHROMAT_FILE:
MSMg01no450_c21.b1 PHD_FILE: MSMg01no450_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:00 2005
(282 letters)
>mm_chr4_135936367_135937048
Length = 682
Score = 472 bits (244), Expect = e-137
Identities = 270/286 (94%), Gaps = 13/286 (4%)
Strand = Plus / Plus
Query: 4 ccaaaacctataaacgggagagaactgaccaagtgaaatagctcctgtctgtgacctgca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ccaaaacctataaacgggagagaactgaccaagtgaaatagctcctgtctgtgacctgca 263
Query: 64 gacacgtctggcaggagtgctattggcttcctctgactgcagagaagtccattgtgtcaa 123
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 264 gacacgtctggcaggagtgctattggcttcctctgactgcagagaagtccgttgtgtcaa 323
Query: 124 tattcctgatgaaaagtgtctgtgatgtgtattctcctttgaaacggttttaacatcttc 183
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 324 tattcctgatgaaaagtgtctgtgatgtgtattctcctttgagacggttttaacgtcttc 383
Query: 184 tgcttttctcaatattgagttaaggaagatatttcagatgggtattttatatctgaattt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgcttttctcaatattgagttaaggaagatatttcagatgggtattttatatctgaat-- 441
Query: 244 ttttg-------tgattttaattcaacaaacaatccttgaacatgg 282
| ||||||||||||||||||||||||||||||||||
Sbjct: 442 ----gagaacagtgattttaattcaacaaacaatccttgaacatgg 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no450_c21.g1 MSMg01no450_c21.g1 CHROMAT_FILE:
MSMg01no450_c21.g1 PHD_FILE: MSMg01no450_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:00 2005
(350 letters)
>mm_chr4_136144538_136145286
Length = 749
Score = 630 bits (326), Expect = 0.0
Identities = 343/352 (97%), Gaps = 7/352 (1%)
Strand = Plus / Minus
Query: 1 tccaggacagtcaaggcaacagagaaacctgtatcaaaaaattcctccaagtgtaataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tccaggacagtcaaggcaacagagaaacctgtatcaaaaaattcctccaagtgtaataat 489
Query: 61 tccttattcactgtattcagcacaccacaacaactctttgtacagttttaatcctttgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tccttattcactgtattcagcacaccacaacaactctttgtacagttttaatcctttgtt 429
Query: 121 gcaagtgtagttctgtagtctaagaattattaaaaaaataagactaagaactattcaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gcaagtgtagttctgtagtctaagaattattaaaaaaataagactaagaactattcaaaa 369
Query: 181 actaagacaagatcctccaccataatattcagtctgaaagggctacagatattagcagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 actaagacaagatcctccaccataatattcagtctgaaagggctacagatattagcagct 309
Query: 241 agtaggttgta---ttgttttaagcaccataataaatgtatttaaagaaaactgtagtga 297
||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agtaggttgtaggcatg----aagcaccataataaatgtatttaaagaaaactgtagtga 253
Query: 298 gaattgagaagttagtttaatttttttaaagtggcagataaaattgtatgac 349
|||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 252 gaattgagaagttagtttaatttttttaaagtggtagataaaattgtatgac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 749
Length adjustment: 9
Effective length of query: 341
Effective length of database: 740
Effective search space: 252340
Effective search space used: 252340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
