Query= MSMg01no450_d03.b1 MSMg01no450_d03.b1 CHROMAT_FILE:
MSMg01no450_d03.b1 PHD_FILE: MSMg01no450_d03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:02 2005
(429 letters)
>mm_chr4_117931381_117932208
Length = 828
Score = 731 bits (378), Expect = 0.0
Identities = 416/429 (96%), Gaps = 1/429 (0%)
Strand = Plus / Minus
Query: 1 gagaaaccctgtcttgaaccccccccccaaaaaaatcagttaacactcagagctctgtgg 60
|||||||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||
Sbjct: 628 gagaaaccctgtcttgaacccccccccc-caaaaatcagctaagagtcagagctctgtgg 570
Query: 61 catcatacttacagccaaagagacccagggtttacatcagaatttatagggctccaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 catcatacttacagccaaagagacccagggtttacatcagaatttatagggctccaaaca 510
Query: 121 gggaagtgtatagccaattcctggccaaacctggggattcagggccatgatgattgatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 509 gggaagtgtatagccaattcctggccaaacctggggattcagggccatgatgagagatct 450
Query: 181 cctataaccccagccagacacccttctaggatatccctagaagttgcaactttgatggtg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 449 cctataaccccagccagacacccttctaggatatccctagaagttgcaactttgatggag 390
Query: 241 ggtcctttgcctgcggnggctcctccagcttcatcttgtctgtgccccgggtgctgtcac 300
| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gttcctctgcctgcggtggctcctccagcttcatcttgtctgtgccccgggtgctgtcac 330
Query: 301 cctgccctttacttttctccctctgaggctgagtccccctggcatgggagcctgggtgca 360
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 329 cctgccctttacttttctccctctgaggctgagtcttcctggcatgggagcctgggtgca 270
Query: 361 gcaaatgttcctgcacactgacctgtgctgggcatgtgagagggaagagtggagtggtgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gcaaatgttcctgcacactgacctgtgctgggcatgtgagagggaagagtggagtggtgc 210
Query: 421 ctctgccac 429
|||||||||
Sbjct: 209 ctctgccac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 828
Length adjustment: 9
Effective length of query: 420
Effective length of database: 819
Effective search space: 343980
Effective search space used: 343980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no450_d03.g1 MSMg01no450_d03.g1 CHROMAT_FILE:
MSMg01no450_d03.g1 PHD_FILE: MSMg01no450_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:02 2005
(532 letters)
>mm_chr4_117783041_117783972
Length = 932
Score = 973 bits (503), Expect = 0.0
Identities = 526/535 (98%), Gaps = 3/535 (0%)
Strand = Plus / Plus
Query: 1 agagagaaatggacaaggctttcaccagaggacacagccaacaagagtaatgaatgtagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 agagagaaatggacaaggctttcaccagaggacacagccaacaagagtaatgaatgtagt 257
Query: 61 atgctcctcatgaccctgcagctactgatgggccagtggagtcctctccgccaactctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 258 atgctcctcatgaccctgcagctactgatgggccagtggagtcctctccaccaactctgc 317
Query: 121 tctggtaacatctacctggagacagcagacagcatccaatcccagaggctgagagttcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tctggtaacatctacctggagacagcagacagcatccaatcccagaggctgagagttcag 377
Query: 181 tcccacagacccacgccagatgccaatcacgagccccagccagactgcccagtacttttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tcccacagacccacgccagatgccaatcacgagccccagccagactgcccagtacttttg 437
Query: 241 acccattaccgacaatcaggattgtctagaccgcctgcctgggttccactaatttgatgg 300
||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||| ||
Sbjct: 438 acccaggaccgacaatcaggattgtctagaccacctgcctaggttccactaatttgacgg 497
Query: 301 actagctcataaatcccaaagaaacactacatttagcag---aagagacatgccaggtaa 357
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 498 actagctcataaatcccaaagaaacactacatttagcagcagaagagacatgccaggtaa 557
Query: 358 cacagaggaaaggagacaaggggcttccatggcctctgcagttggcaccctcgaatcttc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cacagaggaaaggagacaaggggcttccatggcctctgcagttggcaccctcgaatcttc 617
Query: 418 acttgttaactccatcttttggagatttgtggaaacattgttacatggaaatcattatac 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 acttgttaactccatcttttggagatttgtggaaacattgttacatggaaatcattatac 677
Query: 478 aatggccactgtatcagcttactctccctgaaaaggctggggagtgagactaaag 532
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aatggccactgtatcagcttactctccctgaaaaggctggggagtgagactaaag 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
