BAC Information

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BAC

Clone NameMSMg01-450H16
Chromosome4 (Build37)
Map Location 119,369,711 - 119,369,955
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b
Downstream geneHivep3, Edn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450H16.T7 (MSMg01no450_h16.b1)MSMg01-450H16.TJ (MSMg01no450_h16.g1)
ACCAG538200AG538201
length754845
length of high quality
(start - end)
245 (326 - 570)228 (77 - 304)
definitionCHROMAT_FILE: MSMg01no450_h16.b1 PHD_FILE: MSMg01no450_h16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:25 2005CHROMAT_FILE: MSMg01no450_h16.g1 PHD_FILE: MSMg01no450_h16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAATAATTTGCGGGCGCTAAACGAATCACATTTTCAAACAAGGCGCGG
AANTCACTCTGTAGCATAAAAAGCCCTCAAACTCAGAAATCTGCCTGCCT
TTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCATGTCCGGTTTA
CAATATTTTTTAAATCTAACTTTCCCCCCTTCTTTATCCTGCGATAGGAA
ACACTGGCATGCATTGAGCTACCTTTCTTTACACTCCTCGTCTCCTCCTG
TTGTCATCTCTTTCGTCTCTTTGGACTCAACATCTCTTTCACCAATTCTC
TCTTCATCGCCTCGCATCNCTACGTCTCAGCTCATTTACTGGGACGCAAA
CATCAGTTATTTTACCTCTCAAGAAGTCTGTTTGGTTATTTCTTATATCT
TCTCATTTATTCTACAGTCTCCTTCCATCACATATATTTTACAAGCCTTG
TCTTTTATTTAAGAACCATTAAGCACAGACAGTTACCGTAGAGTTCCTGG
TGACCCAGCTATAACCAGGTCTTGTTCTGTTATCTGTAGTGTCTGCTGAC
CTCTCCCCCAGTCCACCTGTTCTTTATAGTTTGCCTGTTTGCAAAAATGT
GCTGTTCCATGTGCCCAGGTGTGCGCGTGGATAGAAGTTGTTGCACTGTT
TGTTTCTCTCTTCAAAGCCATCGTTCCTCGTTTTGCTGGCCGGTTGTCAT
CCCCAATCTTTCCTTTCCTGGCCTTTGTTTCTCTTTCCTTTTTCTCCTCC
CATT
CGATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGTTCTATACCCCCATT
TTTTGTTTGGGTTGTTTGGTTATTTGGTGATTAACTTCTTGAGTTCTTTA
TATATTTTGGATATTAGCCCTCTATTGGATGTGGGATTAGTGAAGATTTT
TTTTCCCAATCTGTAGGTTGCTGATTTGTCTTATTGACTATGTCCTTTGT
CTTATTTTTGATTTCCAGTTTCATGGCGTCTCATTTATCAATTCTTTTTT
GTTGTTGTTGCCAGCTTTTGTTTTTTTTTTTTAGGGACCCAAACGTGCTC
CTAAGACGGTCTCTTTTTCTCCCCCCCTCCACTTTGTTTGTACTTTCTTT
TTTCTATCTCTTCTTGTCTCTCTCCCCTCTTCTGTTGTTTTTTTTTTCTT
CTTTCCTCTCTTCTCGTTCTTTTTTCTACTCATTGTTCTTACTCTCTCTC
ATCCTCTCGCCCTTCCTTTTTTCTTCTTCCCTCCCTTCCTCCTTCTTCCT
CCACCTTTCTCCTCTTTTCCTTTCTTCCCTTCTCTCTTTTGTTATCTCCT
TCCCTTCTTCTCCCTATTTCATCCCACCCTGCTTTTTTTTCTCTCCTCTC
TTCGTTTTTTCTATTTTCTCTTCTTTCTTTCTCTCTTTCCCTCCCTTTTT
CTCTTCACTCCCTTCCTTTTTTTTTTTTTCCCTATTCGTCGTTCTTTACT
TCATTTATTATCTTTCTCTCAATCTTCTATTTTCCGCTTTGTCTCCCTTT
TCTCCACTCATTCCCTTTTATCATTCCTTCATCCTCGCTACTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_h16.b1 MSMg01no450_h16.b1 CHROMAT_FILE:
MSMg01no450_h16.b1 PHD_FILE: MSMg01no450_h16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:25 2005
         (245 letters)



>mm_chr4_119369511_119370155
          Length = 645

 Score =  435 bits (225), Expect = e-126
 Identities = 240/245 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcagctcatttactgggacgcaaacatcagttattttacctctcaagaagtctgtttgg 60
           ||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 201 ctcagctcatttactgggatgcaaacatcagttatattagctctcaagaagtctgtttgg 260

                                                                       
Query: 61  ttatttcttatatcttctcatttattctacagtctccttccatcacatatattttacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ttatttcttatatcttctcatttattctacagtctccttccatcacatatattttgcaag 320

                                                                       
Query: 121 ccttgtcttttatttaagaaccattaagcacagacagttaccgtagagttcctggtgacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttgtcttttatttaagaaccattaagcacagacagttaccgtagagttcctggtgacc 380

                                                                       
Query: 181 cagctataaccaggtcttgttctgttatctgtagtgtctgctgacctctcccccagtcca 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 cagctataaccaggtcttgttctgttatctgtagcgtctgctgacctctcccccagtcca 440

                
Query: 241 cctgt 245
           |||||
Sbjct: 441 cctgt 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)