BAC Information

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BAC

Clone NameMSMg01-450H20
Chromosome4 (Build37)
Map Location 91,228,608 - 91,228,761
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps4_804.1, LOC664840, LOC664848, LOC100042274, Elavl2, LOC664864
Downstream geneLOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450H20.T7 (MSMg01no450_h20.b1)MSMg01-450H20.TJ (MSMg01no450_h20.g1)
ACCAG538207AG538208
length823765
length of high quality
(start - end)
162 (43 - 204)501 (77 - 577)
definitionCHROMAT_FILE: MSMg01no450_h20.b1 PHD_FILE: MSMg01no450_h20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:26 2005CHROMAT_FILE: MSMg01no450_h20.g1 PHD_FILE: MSMg01no450_h20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGGGGTCACATTAATTTCACTCTCATTGGAATCTATTACTATGCAG
TTGGAAGTTTGGAGAAGATAAGCCATCTTGGAATTTTAGGTTGTTCCTGC
TTTTGGACTGGGAGTTTTATATTTGGAGTTAGTTGGGTGAATGGTGGTGG
CAAATCCTCCCCTTTTCTGTCCTTTCGCCTCTTTCGTCTCTCTCCCTTTT
TTCTTTTTTCCCTTCCCCCTCTCCTTTTTCCCCTCCCCCCTTTTTTCCTT
TCCGCCCCCCTCTTTCTCTTTTGCGCCGCCCCCCTTTCTCCTCTTTCTTT
CCTTTTTTCCTCCCCCCTTCTTCGTGCCTTCTTCTTTTCTTTCTCTTCCC
CTCCCCCCCCTTTTTCCCTTTCTTTTTCCCCCATTCCTTCCCTTCCCCCT
TTTTCCTTTCCCCATCTCCCTTCCCTTATTTCTCTTCCTTCTCCCTCTTT
CTTCTCTCCTTTCTTTCCTCTTTCTTCCTCTCTTTCTCCCCTTTCTTTCT
CTTATCCCCCTTTCTCTCCCTCCCCCTCTTCCTCTTTTCCTCCTTTATCT
CCCCCTCCTATCCTCTCTCTCTCTTCCCCCTCCTCCCCTCTTTTTTTTAT
TATTCCTCTCTTTTCTCCCCCTCTCCCTTTCTCTTTTTTTTCCCCCCCCT
CTCCTTCCTCCCCTTCTCCTCCCTTTCTTCTCTCCTCTTTTCTCTTCCCC
CTACCGTCCTTTTCCCTTTCTCTTCCATTTACATCTCTTTTTCCTCTTAC
TTCCTTTTTACTCCTTTCCTCTG
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGAGACTGAAGCAGCATGGACA
AGGACTGCATGGGTCTGCAATGGAAAGAGTCCCAGTGCTGAGTGGACACA
CAGGGCCCAATTTCTAACCCAGATCTATGTTCAATAGATAATCACTCACA
AATGAAAAGTCAGTTTTCTCCCATGGAGTCTCACTGGAAATACAAACCAC
CCTTAAGGCCAGGACCCATGTCCAGCCATAGATAATCAACACTAATGGGA
TCACTATCTCATAAGATTTTGGTGTTTTAGCCCCGGGCTACCTTGCCAGC
AGAGTCTCACCCAACACCCGAAAGGGCCCACACAGGATTCCCCACGGGAT
CCTAAGAACTCTGGTGAGTGGAACACAGCGCCTGCCCCAATCCAATCGCG
CAGAACCTGAGACTGCGGTACATAGGGAAGCAGGCTACCCGGGCCTGACC
TGGGGCACAAGCCCCTTCTGCTCCACTCGAGCCCCGGGCTACCTTGCCAG
CGGAGTCGCCTGACACCCGCAAGGGCCCACACAGGATTCCACACGGGATC
CTAAGACCTCTAGTGAGTGGAACACAACTTCTGCCAAGAGTCTGGTTCGA
ACACCAGATATCTGGGTACCTTCCCTGGAAAAAGAAAGCTTGCCTGCAAA
TAAAACTCTGCCCCCTGAAATTTAAGCAAAGGCTTCCCTTAAAGGTCTGC
TATAAAAGGCTAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_h20.b1 MSMg01no450_h20.b1 CHROMAT_FILE:
MSMg01no450_h20.b1 PHD_FILE: MSMg01no450_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:26 2005
         (162 letters)



>mm_chr4_91228404_91228965
          Length = 562

 Score =  253 bits (131), Expect = 3e-72
 Identities = 149/155 (96%), Gaps = 2/155 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgggg-tcacattaatttcactctcattggaatctattactatgcagttgga 63
           ||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgggggt-accttaatttcactctcattggaatctattactatgcagttgga 263

                                                                       
Query: 64  agtttggagaagataagccatcttggaattttaggttgttcctgcttttggactgggagt 123
           ||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 264 agtttggagaagacaagccgtcttgggattttaggttgttcctgcttttggactgggagt 323

                                              
Query: 124 tttatatttggagttagttgggtgaatggtggtgg 158
           |||||||||||||||||||||||||||||||||||
Sbjct: 324 tttatatttggagttagttgggtgaatggtggtgg 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)