Query= MSMg01no450_j07.b1 MSMg01no450_j07.b1 CHROMAT_FILE:
MSMg01no450_j07.b1 PHD_FILE: MSMg01no450_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:33 2005
(214 letters)
>mm_chr4_11149576_11150185
Length = 610
Score = 321 bits (166), Expect = 2e-92
Identities = 201/214 (93%), Gaps = 4/214 (1%)
Strand = Plus / Minus
Query: 1 tctccagcctcacttgatatttccagtctgaccacacagtctgccctttacggtgctttg 60
||||||||||||||||| |||| ||||||||||||| || ||||||||||||||||||
Sbjct: 410 tctccagcctcacttgagattttcagtctgaccaca-ag---gccctttacggtgctttg 355
Query: 61 gtatgtgcatgtcccgctaacctcctctgcggacctcacagtgctcccagggtgctcctc 120
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gtaggtgcatgtcctgctaacctcctctgcggacctcacagtgctcccagggtgctcctc 295
Query: 121 gtgcttctgtgctctgtctgtcctgtctttttttccggctggaatggccctccactcgct 180
||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 294 atgcttctgtgctctgtctgtcctgtctcctctcccggctggaatggccctccactcgct 235
Query: 181 tatgtgtttccaaattttcttttcttctaaatgg 214
||||||||||||||||||||||||||||||||||
Sbjct: 234 tatgtgtttccaaattttcttttcttctaaatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 610
Length adjustment: 9
Effective length of query: 205
Effective length of database: 601
Effective search space: 123205
Effective search space used: 123205
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no450_j07.g1 MSMg01no450_j07.g1 CHROMAT_FILE:
MSMg01no450_j07.g1 PHD_FILE: MSMg01no450_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:33 2005
(584 letters)
>mm_chr4_10999912_11000895
Length = 984
Score = 1064 bits (550), Expect = 0.0
Identities = 571/584 (97%), Gaps = 12/584 (2%)
Strand = Plus / Plus
Query: 7 gactagttttatttcttgatactaattaaggctgagtagctagcatgagaaagaaaccac 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gactagttttatttcttgatactaattaaggctgagtagctagcatgagaaagaaaccac 266
Query: 67 tagcaacaactttaagtacatctaccatgaattactctatttctttactattcagtacca 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tagcaacaactttaagtacatctaccatgaattactctatttctttactattcagtacca 326
Query: 127 agcacaccctacaaccatcttgtcataatattttaaggtattttaataccagcctgagcc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agcacaccctacaaccatcttgtcataatattttaaggtattttaataccagcctgagcc 386
Query: 187 agttccacattgaaggcccgcagtgcagaagcagacctttgacactctgcagggaacagt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agttccacattgaaggcccgcagtgcagaagcagacctttgacactctgcagggaacagt 446
Query: 247 atttattt------caagtagctttcataatctcgtttcctacaacaaacagaaacaaag 300
| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 a---a---ggaacacaagtagctttcataatctcgtttcctacaacaaacagaaacaaag 500
Query: 301 aaaaaaaggtagttagtctttactttccaaactgcacacacatactgacaaaacccaacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaaaaggtagttagtctttactttccaaactgcacacacatactgacaaaacccaacc 560
Query: 361 agaaacagtgaagccttggatcacagggggcctcagtaattaagctatatagctatttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaaacagtgaagccttggatcacagggggcctcagtaattaagctatatagctatttct 620
Query: 421 ctatcaaaaatgtatctgcttctcaccccaaacacgttaaaaaggaaatagttattattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctatcaaaaatgtatctgcttctcaccccaaacacgttaaaaaggaaatagttattattt 680
Query: 481 tattttcatttacaaagtacttgtcattgcttcagaacattttgcttttagtaagaagtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 tattttcatttacaaagtacttgtcattgcttcagaacattttgcttttagtaagaactg 740
Query: 541 aaatgagctacagaagaagaaaggaaacctgggtgtgctgacac 584
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaatgagctacagaagaagaaaggaaacctgggtgtgctgacac 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
