BAC Information

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BAC

Clone NameMSMg01-450M03
Chromosome4 (Build37)
Map Location 63,865,656 - 64,078,462
singlet/doubletdoublet
Overlap genenone
Upstream geneCol27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
Downstream genePappa, Astn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450M03.T7 (MSMg01no450_m03.b1)MSMg01-450M03.TJ (MSMg01no450_m03.g1)
ACCAG538409AG538410
length754792
length of high quality
(start - end)
486 (77 - 562)345 (80 - 424)
definitionCHROMAT_FILE: MSMg01no450_m03.b1 PHD_FILE: MSMg01no450_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:47 2005CHROMAT_FILE: MSMg01no450_m03.g1 PHD_FILE: MSMg01no450_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,077,977 - 64,078,462)(63,865,656 - 63,866,000)
sequence
NCCTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAGC
CGCGGAATTCTACAGATTTCTTAAGAGATAACAGATACTATCTAATCTCT
TTAAGAAAGACAGGATGAATACACGCACTTCCTGTCTGTAGTTTATATTG
CACCTAAAAGGAATAGAAAGCTTCTTCCACAAAAAAGTACTGAGAAATCA
TGCATGCATTTGTGAGGGAAAGATGCACAGAAGCTTAAATATGAGATCTT
ATAATATAAGGATGATATATGCAAATATTCTCAGAGGTGATGACATAAAA
ATATTTGCATGAAAAGAATTCTATTTTTATTTATCAAAATATTACTACAC
ATACATCACAGGGCTCAAATAGAAAGTAATGTCTATTAGTTCCCATTTGA
CCAACAGATTGGGAAATGATCTTTACAATCCTAAATCCAATTGAGGGCTC
ATATCCAATATATAACAAGAACTCAAGAAGTTGTACTCCAGAAAACCAAA
TAACTCTATTAAAAAATGGGGTATAACCAGGCAGTGGCGGCACACGCCTT
TAATCCCAGCACTTGGGAGGTATAGGCAGAGGTGCGTGGGTTTCTGAGTT
CAAGGTCAGCCTGGTATACGATTGAGTTCCAGGATAGTCCTGTGTTCAAA
GATAAACCCCGTTCTCCCCACCTTATACTTTTACCGATTTACCTTACTTT
CTGCATTATTGTTCCTCCTTATTCTTTTAGGTCTTCCCCTCCTTCCTTTG
GCCG
GTACGAATAGAGTGAGTAGAGCTGGAGGGCGAGTGTTTCXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGAGAAGGCTGGCC
TCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGAATTGGAA
TATTCCTTTAAAGCCATTTTTATTTCCTTTCTCTTGGTTGGGCTGCTGTT
CCTAAGGCTAGTGCTGAAACTCCAAGGTTGTTTAGCAGCCATTTAAGCAT
CTAAAGTCTTCTACCCGGGACACCCCAAGTATTGTCTCAATGAGGAATTA
TCTGTAGTACCAGCATTAGTGTATAATCCTGTGAAAAATATGTCACAAAC
AACATGTCACTGGCTGTGCTCTTCCTTGTCAATCTCCACAGAGTCCATGG
TTCATTTTCTTTCTGTGTAACATAGCCTGCCTAGATTAAATGCTTATCAG
TTATGTAACTTTTTAAAAATTATTGTTTATTTATTATCATATATGCTATA
CTAATAAAAGTAAGTGTATGTAGAGATAAACAGTTCTTCGTTTGTTACTT
CATCCCATTTTGCTTGTTCTCTCCTCTTCCCCTTTCCCGCTTTCTTACTC
CTTCCCTCCCTTCTTTTCCCCTTTTCCTCTTCCCCCTCCTCTTTCTCTTT
CCTCCCTTTTCTTCCTCCTTCTTCCTCCTTCCCTTTTTTCTTCTCTTCTT
CTATCTTTTTTTTCCTCTTCTTTCTTCTTTCCTTTTCCCTATTTCCTCTT
TCCCCTTCCTCTTTTTTTCCTTCTTCTTACCTTTCCTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_m03.b1 MSMg01no450_m03.b1 CHROMAT_FILE:
MSMg01no450_m03.b1 PHD_FILE: MSMg01no450_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:47 2005
         (486 letters)



>mm_chr4_64077940_64078825
          Length = 886

 Score =  862 bits (446), Expect = 0.0
 Identities = 476/486 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gataacagatactatctaatctctttaagaaagacaggatgaatacacgcacttcctgtc 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 523 gataacagatactatctaatctctttaagaaagacaagatgaatacacgcagttcctgtc 464

                                                                       
Query: 61  tgtagtttatattgcacctaaaaggaatagaaagcttcttccacaaaaaagtactgagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgtagtttatattgcacctaaaaggaatagaaagcttcttccacaaaaaagtactgagaa 404

                                                                       
Query: 121 atcatgcatgcatttgtgagggaaagatgcacagaagcttaaatatgagatcttataata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 atcatgcatgcatttgtgagggaaagatgcacagaagcttaaatatgagatcttataata 344

                                                                       
Query: 181 taaggatgatatatgcaaatattctcagaggtgatgacataaaaatatttgcatgaaaag 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 343 taaggatgatatatgcaaatattctcagaggtgatggcataaaaatatttgcatgaaaag 284

                                                                       
Query: 241 aattctatttttatttatcaaaatattactacacatacatcacagggctcaaatagaaag 300
           |||||||  || |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aattctaagttcaagtatcaaaatattactacacatacatcacagggctcaaatagaaag 224

                                                                       
Query: 301 taatgtctattagttcccatttgaccaacagattgggaaatgatctttacaatcctaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 taatgtctattagttcccatttgaccaacagattgggaaatgatctttacaatcctaaat 164

                                                                       
Query: 361 ccaattgagggctcatatccaatatataacaagaactcaagaagttgtactccagaaaac 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 163 ccaattgagggctcatatccaatatataaaaagaactcaagaagttgtactccagaaaac 104

                                                                       
Query: 421 caaataactctattaaaaaatggggtataaccaggcagtggcggcacacgcctttaatcc 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 103 caaataactctattaaaaaatggggtataaccaggcagtggtggcacacgcctttaatcc 44

                 
Query: 481 cagcac 486
           ||||||
Sbjct: 43  cagcac 38


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no450_m03.g1 MSMg01no450_m03.g1 CHROMAT_FILE:
MSMg01no450_m03.g1 PHD_FILE: MSMg01no450_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:47 2005
         (345 letters)



>mm_chr4_63865456_63866200
          Length = 745

 Score =  613 bits (317), Expect = e-180
 Identities = 338/345 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgtagagaaggctggcctcgaactcagaaatctgcctgcctctgcctcccaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgtagagaaggctggcctcgaactcagaaatctgcctgcctctgcctcccaagtgc 260

                                                                       
Query: 61  tggaattggaatattcctttaaagccatttttatttcctttctcttggttgggctgctgt 120
           |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 261 tggaattggaatattcctttaaagccgtttttatttccattctcttggttgggctgctgt 320

                                                                       
Query: 121 tcctaaggctagtgctgaaactccaaggttgtttagcagccatttaagcatctaaagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctaaggctagtgctgaaactccaaggttgtttagcagccatttaagcatctaaagtct 380

                                                                       
Query: 181 tctacccgggacaccccaagtattgtctcaatgaggaattatctgtagtaccagcattag 240
           |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tctacctgggacaccccaagtattgtctcaatgaggaatcatctgtagtaccagcattag 440

                                                                       
Query: 241 tgtataatcctgtgaaaaatatgtcacaaacaacatgtcactggctgtgctcttccttgt 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaaaatcctgtgaaaaatatgtcacaaacaacatgtcactggctgtgctcttccttgt 500

                                                        
Query: 301 caatctccacagagtccatggttcattttctttctgtgtaacata 345
           ||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 501 caatctccacagagtccatggttcattctctttctgggtaacata 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)