BAC Information

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BAC

Clone NameMSMg01-451D05
Chromosome4 (Build37)
Map Location 6,008,873 - 6,009,101
singlet/doubletsinglet
Overlap genenone
Upstream gene1700012H17Rik, LOC669309
Downstream gene3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414, Tox, LOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451D05.T7 (MSMg01no451_d05.b1)MSMg01-451D05.TJ (MSMg01no451_d05.g1)
ACCAG538747AG538748
length698751
length of high quality
(start - end)		419 (54 - 472)231 (82 - 312)
definitionCHROMAT_FILE: MSMg01no451_d05.b1 PHD_FILE: MSMg01no451_d05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:22 2005CHROMAT_FILE: MSMg01no451_d05.g1 PHD_FILE: MSMg01no451_d05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGTTTGGCTCTGAGCCCCATTTTTTAATGGGGTTA
TTTGATTTTCTGGAGTCCACCTTCTCGAGTTCTTTATATATATTGGATAT
TAGTCCCCTATCTGATTTAGGATAGGTAAAGATCTTTTCCTAATCTTTTG
GTGGTCTATTTGTCTTATTGATGGTGTCTTTTGCCTTACNAGAAGCTTTG
CAATTTTATGAGGTCCCATTTGTTGATTCTCGATCTTACAGCACAAGCCA
TTGCTGTTCTATTCAGGAATTTTTCCCCTGTGCCTATATCTTCGATGCTT
TTCCCCACTTTCTTCTCTATAAGCTTCACTGTCTCTGGTTTTATGTGGAG
TTCCTTGATCCACTTAGATTTGACAGTACAAGGGGATAGGAATGAATCAA
TTCACATTCTTCTACATGTTAACCACCAGTTGTGCCAGCACCATTTTGTT
TGAAAAGGGTGGGCCTTTTTTTCCCCCCCCCCCNNNNNGCNNCCCAGGNN
NNNNNNNTTNTGGCTTTTCTTCTTCTTCTGTTCCCTGTTTGTTTCTTTTC
CGGGTCGCCATGGGGCGCTACTTTTTTTGCCGTTTTGCTATATTTCTTAC
TTTCTCTTTTCTGTGGTTAGCCGGTTATCCTTCGTATAATCAACTAAA

NNNNNNCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAAAGGTTTAGGTAAT
CTAATGTGATTGTTTGGGGTCAAAGTGGTGACATTTGTACAATTTTGATT
GGCAACTATGTTATCTCTACATTTAGAGAATGGGTTAGGTAATCTAGAAT
TTCATTGGTGGGTGCTGGGTAGGTCATATGGTTCAGTTTCNNTGATTGGA
TTGTTCCAGGTGGTTAGTAGTCTGCATTCCTATGTCATGAACATTTTACG
AAATAGGATGAAGATAGGGGCTGGCCCCAACACAGGGTGGGNCCACATTT
TCCCCCNNNNNNTGTNNNNNNNNNTTTNNNNNNTTATTTATAAATTATAT
CATATTTCTCTTTCTCTTATTCCCCCCTACCCTCACCTTCTTTCTCTTCT
CTTTTTTTCTCTTCTTCTCTTTCCCTTTCCTTACTTTACTTCTTTTTATC
TCTTTACCTTCAATTTTTTATTTATCTTTATTCTTCTTTTTTTTCCCTCC
TTTTTTTATTTATCCCTCCTCTCCTTTTTTTATTTATCATATTTTCATTC
CCCCTACCATTTCATTATCTCCTTAATCCATTCTTTTATCTTCTTCTACT
TTCTTTCCTTTTTCTACCTTTCATTTTTATCCATATATCCCTTATTCTAA
CCCCCTTTTTCTTATATTTTTCTTCCCTATCCCTTATATTTTTCTTTTCT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_d05.g1 MSMg01no451_d05.g1 CHROMAT_FILE:
MSMg01no451_d05.g1 PHD_FILE: MSMg01no451_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:22 2005
         (231 letters)



>mm_chr4_6008673_6009302
          Length = 630

 Score =  360 bits (186), Expect = e-104
 Identities = 220/234 (94%), Gaps = 9/234 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaaaaggtttaggtaatctaatgtgattgtttggggtcaaagtggtgacatttgtaca 60
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 201 tctaaaaggtttaggtaatctaatgtgattggttggggtcaaagtggtgacattagtaca 260

                                                                       
Query: 61  attttgattggcaactatgttatctctacatttagagaatgggttaggtaatctagaatt 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttgattggcaactatgttagctctacatttagagaatgggttaggtaatctagaatt 320

                                                                       
Query: 121 tcattggtgggtgctgggtaggtcatatggttc-agtttcnntgattggattgttccagg 179
           |||||||||||||||||| |||||||||||||| | ||||  |||||| |||||||||||
Sbjct: 321 tcattggtgggtgctgggcaggtcatatggttcca-tttc--tgattgtattgttccagg 377

                                                                 
Query: 180 tggttagtagtctgc---attcctatgtcatgaacattttacgaaataggatga 230
           |||||||||||||||   ||||||||||||||||||||||||||  ||||||||
Sbjct: 378 tggttagtagtctgctgcattcctatgtcatgaacattttacga--taggatga 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 630
Length adjustment: 9
Effective length of query: 222
Effective length of database: 621
Effective search space:   137862
Effective search space used:   137862
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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