Query= MSMg01no451_h20.b1 MSMg01no451_h20.b1 CHROMAT_FILE:
MSMg01no451_h20.b1 PHD_FILE: MSMg01no451_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:45 2005
(658 letters)
>mm_chr4_50048849_50049906
Length = 1058
Score = 1228 bits (635), Expect = 0.0
Identities = 650/655 (99%), Gaps = 2/655 (0%)
Strand = Plus / Plus
Query: 5 gaattcttgggcacatggagatgttgaattaagctgacacaatggcatgagtcttgcaag 64
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattcttgggcacatggagatgttgaattaagctgacacaacggcatgagtcttgcaag 264
Query: 65 cttctttgattgcacttgaaacactggccaccgggggccactgttagaataactgaggga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttctttgattgcacttgaaacactggccaccgggggccactgttagaataactgaggga 324
Query: 125 agaggcagcttgaaagcaccagaagttgagagccactgggtt-aaaacggttaaagcagg 183
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 agaggcagcttgaaagcaccagaagttgagagccactgggttaaaaacggttaaagcagg 384
Query: 184 gttagggaaggaggaatgttagggaagttttcagtgctacagaagtactgtaggacagaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttagggaaggaggaatgttagggaagttttcagtgctacagaagtactgtaggacagaa 444
Query: 244 agttagcactgaaatatagagtatccgaccaccatggtaaatgaggtcggcaaatcttcc 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 agttagcactgaaatatagagtatccgaccaccatggtaaatgaggtcggcaaatcctcc 504
Query: 304 ataacctagttagcttgagtgtagttgaagttgactcgccgtggagtcagagaaactgca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ataacctagttagcttgagtgtagttgaagttgactcgccgtggagtcagagaaactgca 564
Query: 364 atgttcatgttacagcattgatttttaaagcccaaagctgcctgagtgaggttgagatta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgttcatgttacagcattgatttttaaagcccaaagctgcctgagtgaggttgagatta 624
Query: 424 ctccttcaggtgatgccgaaagcgagcatgatggatgaacagaaatctgggttagcctgg 483
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 625 ctccttcaggtgatgccgaaagcgagcgtgatggatgaacagaaatctgggttagcctgg 684
Query: 484 gttttcacaagctgggtgccctcctgggagcaggatgggggggaaagaatccaccgctct 543
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 685 gttttcacaagctgggtgccctcctgggagcaggatgggggg-aaagaatccaccgctct 743
Query: 544 tagagctaggaagggcagctctgtgtaggatgtagagagttctcatgagtaaagagcata 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tagagctaggaagggcagctctgtgtaggatgtagagagttctcatgagtaaagagcata 803
Query: 604 agaactaggaaagaagtaaaggatctataactggccaggcaaggatttgtgacag 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 agaactaggaaagaagtaaaggatctataactggccaggcaaggatttgtgacag 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_h20.g1 MSMg01no451_h20.g1 CHROMAT_FILE:
MSMg01no451_h20.g1 PHD_FILE: MSMg01no451_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:45 2005
(640 letters)
>mm_chr4_50233797_50234836
Length = 1040
Score = 650 bits (336), Expect = 0.0
Identities = 341/344 (99%), Gaps = 3/344 (0%)
Strand = Plus / Minus
Query: 1 acttgcactaagtaattagcaaggtctctggtaccacattttcgttcttttactttgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 acttgcactaagtaattagcaaggtctctggtaccacattttcgttcttttactttgtgt 285
Query: 61 ttaaaacatgacaaatggcagtccagtgcaaaaaaatacacaaaatacacacaagtaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttaaaacatgacaaatggcagtccagtgcaaaaaaatacacaaaatacacacaagtaata 225
Query: 121 tagtgactaaacaggatatatgaatgaagagatcagttcaggaactttggaaaattcact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tagtgactaaacaggatatatgaatgaagagatcagttcaggaactttggaaaattcact 165
Query: 181 cagctcctccaagagaaaggccatagaacacataggcacctctactctctggaagggaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 cagctcctccaagagaaaggccatagaacacataggcacctctactctctggaagggaga 105
Query: 241 agctaattatatttctcagaccatggggggcaggactgaccactgaccgataa---aagc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 104 agctaattatatttctcagaccatggggggcaggactgaccactgaccgataaaagaagc 45
Query: 298 ccagagcagagggaccattggcccccttgcagccaaggaaaacc 341
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 ccagagcagagggaccattggcccccttgcagccaaggaaaacc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
