Query= MSMg01no451_n05.b1 MSMg01no451_n05.b1 CHROMAT_FILE:
MSMg01no451_n05.b1 PHD_FILE: MSMg01no451_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:13 2005
(540 letters)
>mm_chr4_22302319_22303258
Length = 940
Score = 466 bits (241), Expect = e-135
Identities = 255/261 (97%), Gaps = 5/261 (1%)
Strand = Plus / Minus
Query: 5 gaattcaaaatagctaaagagaagtacattgaccaaagtttggcatactgatagaaaagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaattcaaaatagctaaagagaagtacattgaccaaagtttggcatactgatagaaaagc 389
Query: 65 cataaaataaaaagcataaaataattttcctactaggctatatttcttagcatttgtcga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cataaaataaaaagcataaaataattttcctactaggctatatttcttagcatttgtcga 329
Query: 125 caattctgaactaataatttttaaaattttgtttatcagaatctgataaaaatataataa 184
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 328 caattctgaactaataatttttaaatttttgtttatcagaatctgataaaaatataataa 269
Query: 185 accatacttttctggaggtttcaaacctattgttttgcttcaatctattcctgaagaaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 accatacttttctggaggtttcaaacctattgttttgcttcaatctattcctgaagaaat 209
Query: 245 attttaggtag---caaacac 262
| |||||| || |||||||
Sbjct: 208 a-tttagg-agagccaaacac 190
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_n05.g1 MSMg01no451_n05.g1 CHROMAT_FILE:
MSMg01no451_n05.g1 PHD_FILE: MSMg01no451_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:13 2005
(595 letters)
>mm_chr4_22165052_22166046
Length = 995
Score = 998 bits (516), Expect = 0.0
Identities = 574/598 (95%), Gaps = 12/598 (2%)
Strand = Plus / Plus
Query: 1 attatgtagatcagacaaactaacctcgaactcaaaaataccttcctgcctctgccttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attatgtagatcagacaaactaacctcgaactcaaaaataccttcctgcctctgccttcc 260
Query: 61 aaatactgaaattatagcaagtaccaccacagtgggccctcagtgtatcttgaaacataa 120
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 aaatactgaaattacagcaagtaccatcacagtgggccctcagtgtatcttgaaacatag 320
Query: 121 caagtgaacctttggttttgctaagagcatagcaattgggcttgtgaggtagttaggcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagtgaacctttggttttgctaagagcatagcaattgggcttgtgaggtagttaggcct 380
Query: 181 tgatacacatgacttttccactctgcagattttctagaaaatttggcttaaaaaaaccaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 tgatacacatgacttttccactctgcagattttctagaaaatttggcttaaaaa---caa 437
Query: 241 a-aaaaaaaaaaaaaaaaaaa--ccaaaacaccccaacccccagtctttgtggtctttct 297
| ||| ||| ||| ||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 438 acaaacaaacaaacaaaaaaaccccaaaacacccaaaaccccagtctttgtggtctttct 497
Query: 298 taggtccgcacttgctaacctttaaaacctggctctggctctggctctgctgttctattg 357
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 498 taggtccgcacttgctaacctttaaaacctggctctggct-----t-tgctgttctattg 551
Query: 358 acagtatcctcttgagaaactccccaaatgtcatattctgtctttcttttcatgctggtc 417
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 552 acagtatcctcttgagaaactccccaaatgtcatagtctgtctttcttttcatgctggtc 611
Query: 418 ttctgaacgtgtcctctgataacgtctgacactccagtggtgcttacctcaggctgcccg 477
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 612 ttctgaacgtgtcctctgataacgtctgacactccagcggcgcttacctcaggctgcccg 671
Query: 478 ctctaacgcccctacactttagcctcccccatacatttcttttccacttcagatatcccc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ctctaacgcccctacactttagcctcccccatacatttcttttccacttcagatatcccc 731
Query: 538 attgtgggcacacagacaggatccacacttagatttgccctgctcctcccctgtccac 595
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 attgtggacacacagacaggatccacacttagatttgccctgctcctcccctgtccac 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
