BAC Information

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BAC

Clone NameMSMg01-452F09
Chromosome4 (Build37)
Map Location 109,374,144 - 109,513,560
singlet/doubletdoublet
Overlap geneFaf1
Upstream geneZfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307
Downstream geneDmrta2, Elavl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452F09.T7 (MSMg01no452_f09.b1)MSMg01-452F09.TJ (MSMg01no452_f09.g1)
ACCAG539612AG539613
length751741
length of high quality
(start - end)		654 (76 - 729)569 (84 - 652)
definitionCHROMAT_FILE: MSMg01no452_f09.b1 PHD_FILE: MSMg01no452_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:52 2005CHROMAT_FILE: MSMg01no452_f09.g1 PHD_FILE: MSMg01no452_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,512,907 - 109,513,560)(109,374,144 - 109,374,712)
sequence
NNNNNCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCCTATTTCGAAAATTGCCAAATTTATGTAACTATTATATC
AATATCTGTCAAAAGTAGCCCCAATTTTACCAAGTGGATAGGCCACAAAA
AGGATTTACGTTAGAAATCATTTTGCATATAGCATCTTTTCTTATTCTCT
ATCATGCATCTCATAAGTGAAAATGAGAAAGATAGCAGATATATTCTTCT
TTGTTAATGGTAATGGTAATATTACTATTCATCTTCACACTGACATCTCT
GACAAATGGTGAACAAGTATTACCAACAGAAAGTACGCTGTTTGCCAATC
AACTTCCAAGAAACTAATTATACACTGAGATGTTTACTAAACACTTTTGT
CATTTTTACAAGCATTTTGAAAATCTGGAGGCTTAGTAAAAAAGTCAGAA
TTCAACAGACTCTAGTTCTAACGAAGCAAGTCTATTTCTAAACTTACAGA
AAGGGGTTTTAAAGTCCACTATTCTTCGTAAGTTTAATTCTAGAAGGGAG
AATTATAATGCTTGTCCCAAAGAGCTACGAATACTCACTCATTGGAGATT
TTCTCAGGGTAGATGATGCCATGCCAAATACTTCTCCGTCATCCACTCCA
AATTCTGAAGCATCTTCAAAGTCATCGCCATCACTATCACTAACCATATG
AACATCCGTGCTTTGCTATAAGGAAAGTCCTGATTAGATTCAGACTGATT
T

NNGGTTTCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGATCTGCCTGCTTC
TGCTTCCCAAGTGCTGGGATTAAAGGCATGCACTGTGGCTTGCTTTCTTT
GGTTTTAATTATCCAGTTTATGTAAGTTTCTGGTTTCCAAAGGAGGAGAG
CCTAAGTTTTCTTACTCTATTAATTTTTTTCTTTTTTTTCCGAGACAGAG
TTTCTCTGTATAGCCCTGGGTGTCCTGGAACTCACTTTGTAGACCAGGCT
GGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCTAAGTGCTGGAATT
AAAGGCGTGTGCCACCACGCCCGGCTACTCCCTTAATTTTTGATTTTTGA
GATGGTATCCAAACCTAGGTGAAGACCTGGGTTGGTCTGGAATTCTATAT
ACCTAGTCCGTCCTCAAACTCATTCTATTTCTCTAGATCTAGATGTACAG
TAGCTCATCCATCTCCTGCCTCATCTTTTAATCTAGTATTCAATTACCAT
ATAGAACAAAGGTCATATTTATTGGCACTCATGGAAGCTGCATGGAGCCC
ATGAAGTTGGTATCCCTGGAGCTCCTTGCATGACTTACAGGAAGCTTGAC
CTGAATCTATACTCTCTTGCAGGTTCTATTGCTTATATAGTCTTAAGGAA
GAGCCTTGTGAATCTTGTATATTTCAAGGCCTTCCTGAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_f09.b1 MSMg01no452_f09.b1 CHROMAT_FILE:
MSMg01no452_f09.b1 PHD_FILE: MSMg01no452_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:52 2005
         (654 letters)



>mm_chr4_109512707_109513760
          Length = 1054

 Score = 1234 bits (638), Expect = 0.0
 Identities = 650/654 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccaaatttatgtaactattatatcaatatctgtcaaaagtagccccaattttaccaagt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 854 gccaaatttatgtaactattatatcaatatctgtcaaaagtagctccaattttaccaagt 795

                                                                       
Query: 61  ggataggccacaaaaaggatttacgttagaaatcattttgcatatagcatcttttcttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 794 ggataggccacaaaaaggatttacgttagaaatcattttgcatatagcatcctttcttat 735

                                                                       
Query: 121 tctctatcatgcatctcataagtgaaaatgagaaagatagcagatatattcttctttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tctctatcatgcatctcataagtgaaaatgagaaagatagcagatatattcttctttgtt 675

                                                                       
Query: 181 aatggtaatggtaatattactattcatcttcacactgacatctctgacaaatggtgaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aatggtaatggtaatattactattcatcttcacactgacatctctgacaaatggtgaaca 615

                                                                       
Query: 241 agtattaccaacagaaagtacgctgtttgccaatcaacttccaagaaactaattatacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 agtattaccaacagaaagtacgctgtttgccaatcaacttccaagaaactaattatacac 555

                                                                       
Query: 301 tgagatgtttactaaacacttttgtcatttttacaagcattttgaaaatctggaggctta 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 554 tgagatgtttactaaacacttttgtcatttttacaagcattttgaaaagctggaggctta 495

                                                                       
Query: 361 gtaaaaaagtcagaattcaacagactctagttctaacgaagcaagtctatttctaaactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gtaaaaaagtcagaattcaacagactctagttctaacgaagcaagtctatttctaaactt 435

                                                                       
Query: 421 acagaaaggggttttaaagtccactattcttcgtaagtttaattctagaagggagaatta 480
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aaagaaaggggttttaaagtccactattcttcgtaagtttaattctagaagggagaatta 375

                                                                       
Query: 481 taatgcttgtcccaaagagctacgaatactcactcattggagattttctcagggtagatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 taatgcttgtcccaaagagctacgaatactcactcattggagattttctcagggtagatg 315

                                                                       
Query: 541 atgccatgccaaatacttctccgtcatccactccaaattctgaagcatcttcaaagtcat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atgccatgccaaatacttctccgtcatccactccaaattctgaagcatcttcaaagtcat 255

                                                                 
Query: 601 cgccatcactatcactaaccatatgaacatccgtgctttgctataaggaaagtc 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cgccatcactatcactaaccatatgaacatccgtgctttgctataaggaaagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no452_f09.g1 MSMg01no452_f09.g1 CHROMAT_FILE:
MSMg01no452_f09.g1 PHD_FILE: MSMg01no452_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:52 2005
         (569 letters)



>mm_chr4_109373944_109374912
          Length = 969

 Score = 1100 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagatctgcctgcttctgcttcccaagtgctgggattaaaggcatgcactgtggcttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagatctgcctgcttctgcttcccaagtgctgggattaaaggcatgcactgtggcttgc 260

                                                                       
Query: 61  tttctttggttttaattatccagtttatgtaagtttctggtttccaaaggaggagagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctttggttttaattatccagtttatgtaagtttctggtttccaaaggaggagagcct 320

                                                                       
Query: 121 aagttttcttactctattaatttttttcttttttttccgagacagagtttctctgtatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagttttcttactctattaatttttttcttttttttccgagacagagtttctctgtatag 380

                                                                       
Query: 181 ccctgggtgtcctggaactcactttgtagaccaggctggcctcaaactcagaaatccgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctgggtgtcctggaactcactttgtagaccaggctggcctcaaactcagaaatccgcc 440

                                                                       
Query: 241 tgcctctgcctcctaagtgctggaattaaaggcgtgtgccaccacgcccggctactccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcctctgcctcctaagtgctggaattaaaggcgtgtgccaccacgcccggctactccct 500

                                                                       
Query: 301 taatttttgatttttgagatggtatccaaacctaggtgaagacctgggttggtctggaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatttttgatttttgagatggtatccaaacctaggtgaagacctgggttggtctggaat 560

                                                                       
Query: 361 tctatatacctagtccgtcctcaaactcattctatttctctagatctagatgtacagtag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctatatacctagtccgtcctcaaactcattctatttctctagatctagatgtacagtag 620

                                                                       
Query: 421 ctcatccatctcctgcctcatcttttaatctagtattcaattaccatatagaacaaaggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcatccatctcctgcctcatcttttaatctagtattcaattaccatatagaacaaaggt 680

                                                                       
Query: 481 catatttattggcactcatggaagctgcatggagcccatgaagttggtatccctggagct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catatttattggcactcatggaagctgcatggagcccatgaagttggtatccctggagct 740

                                        
Query: 541 ccttgcatgacttacaggaagcttgacct 569
           |||||||||||||||||||||||||||||
Sbjct: 741 ccttgcatgacttacaggaagcttgacct 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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