Query= MSMg01no452_j22.b1 MSMg01no452_j22.b1 CHROMAT_FILE:
MSMg01no452_j22.b1 PHD_FILE: MSMg01no452_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:13 2005
(657 letters)
>mm_chr4_149433067_149434123
Length = 1057
Score = 1181 bits (611), Expect = 0.0
Identities = 636/653 (97%), Gaps = 14/653 (2%)
Strand = Plus / Minus
Query: 5 cctcagttctgagggtccttgcttgtaagagctcctccctgtagcaagggcaagcctgtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 cctcagttctgagggtccttgcttgtaagagctcctccctgtagcaagggcaagcctgtg 761
Query: 65 ggctccttgtctctgcaaggaaacagaccccagcctggggtgatctgccaggccaacttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 ggctccttgtctctgcaaggaaacagaccccagcctggggtgatctgccaggccaacttt 701
Query: 125 cctcttgccacctagctccaagcatcccatgggtctcactagtgacatcagctggttccc 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 cctcttgccacctagttccaagcatcccatgggtctcactagtgacatcagctggttccc 641
Query: 185 accaccaccacactagtgaccccacagctggttctcaccaacatccaccatcacactagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 accaccaccacactagtgaccccacagctggttctcaccaacatccaccatcacactagt 581
Query: 245 gaccccacagctggttctcaccaacatccaccatcacactagtgaccccacagctggttc 304
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gaccccacagctggttcccaccaacatccaccatcacactagtgaccccacagctggttc 521
Query: 305 ccaccaacatccaccatcacactagtgaccccacagctggttcccaccaacatccaccat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ccaccaacatccaccatcacactagtgaccccacagctggttcccaccaacatccaccat 461
Query: 365 cacactagtgaccccacagctggttcccaccaacatccaccatcacactagtgaccccac 424
|||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 460 cacactagtgaccccacagctggttctcaccaacatccaccatcaca------------- 414
Query: 425 agctggttcccaccaccacactagtgaccccacagctgccaggtacttcccaggtgacaa 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 -gctggttcccaccaccacactagtgaccccacagctgccaggtacttcccaggtgacaa 355
Query: 485 gaagaacttaaattctttgtcttgatgaaaaggcctgctcagttcacctcattccctcaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gaagaacttaaattctttgtcttgatgaaaaggcctgctcagttcacctcattccctcaa 295
Query: 545 gctttctgcacttctgagctgcacagtggctaccctgtcaagggcaggaggctatgtctg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gctttctgcacttctgagctgcacagtggctaccctgtcaagggcaggaggctatgtctg 235
Query: 605 ctttcccagagacagtgtgtgggaaaacagagagttgtgcgcactcaccagga 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ctttcccagagacagtgtgtgggaaaacagagagttgtgcgcactcaccagga 182
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 91
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 3
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_j22.g1 MSMg01no452_j22.g1 CHROMAT_FILE:
MSMg01no452_j22.g1 PHD_FILE: MSMg01no452_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:13 2005
(594 letters)
>mm_chr4_149285296_149286289
Length = 994
Score = 1060 bits (548), Expect = 0.0
Identities = 582/596 (97%), Gaps = 6/596 (1%)
Strand = Plus / Plus
Query: 1 ttgttctagagtcaagagcagtggtgacggggctctgcgacatgaatgctacctggataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgttctagagtcaagagcagtggtgacggggctctgcgacatgaatgctacctggataa 260
Query: 61 ttacccagaaaatgccacgggagcagcttcaccggtcacacaggtcggtcactcccctac 120
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ttacccagaaaatgccatgggagcagcttcaccggtcacacaggtcggtcactcccgtac 320
Query: 121 agccaccaatgtcattggatgtcctgctctcttgttagggatatgtggctggacctaagc 180
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 agccaccaatgtcattggatatcctgctctcttgttagggatgtgtggctggacctaagc 380
Query: 181 acactgagaaggggccaggtttgggacagaccccaaggctgtgagaggggcatgctaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acactgagaaggggccaggtttgggacagaccccaaggctgtgagaggggcatgctaggc 440
Query: 241 ggaccccagtcttttctctgttctcaccttcctgttccttggatcccaactcagcccgtg 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 441 ggaccccagtcttttctctgttttcaccttcctgttccttggatcccaactcaacccgtg 500
Query: 301 ctccacttggcacacagcagtcagcctgggaatggaagagacccagccccaagtacacgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 ctccacttggcacacagcagtcagcctgggaatggaagagacccagccccaagtacatgg 560
Query: 361 tgggaccttcctatctctggctggtgggtggggtgggtaagaaaaacacagatgggaagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgggaccttcctatctctggctggtgggtggggtgggtaagaaaaacacagatgggaagc 620
Query: 421 aaagccaggagcacagcatgcaagagcaaaggcactggccctgggggctgatgccacatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagccaggagcacagcatgcaagagcaaaggcactggccctgggggctgatgccacatt 680
Query: 481 cacaggtacgtatacacacgcatgtacatacacacacacacacacacacacagaggcatg 540
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 681 cacaggtacgtatacacacgcatgtaca----cacacacacacacatacacagaggcatg 736
Query: 541 catgcacacatacacacacac--gcacactcacacacacacagaggcacgcatgca 594
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 737 catgcacacatacacacacacacgcacactcacacacacacagaggcacgcatgca 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
