BAC Information

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BAC

Clone NameMSMg01-452O12
Chromosome4 (Build37)
Map Location 128,837,152 - 128,837,321
singlet/doubletsinglet
Overlap geneS100pbp
Upstream gene4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5
Downstream geneYars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452O12.T7 (MSMg01no452_o12.b1)MSMg01-452O12.TJ (MSMg01no452_o12.g1)
ACCAG540047AG540048
length744787
length of high quality
(start - end)
511 (74 - 584)174 (131 - 304)
definitionCHROMAT_FILE: MSMg01no452_o12.b1 PHD_FILE: MSMg01no452_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:37 2005CHROMAT_FILE: MSMg01no452_o12.g1 PHD_FILE: MSMg01no452_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTATCTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTAATACTTACGCACATTTCATCCAGTAGGTCCCCTTCCATCA
GCAAATAAGGAATTATAGGCTTCCTTTTTCTTTTCTTTCTTTTTTTTTTT
TAAATTTATTTATTATATGTAAGTACACTGTGGCTGTCTTCAGACACTCC
AGAAGAGGGAGTCAGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGG
GATCTAAACTCTGGACCTTTAGGAAGAGCAGTCGGGTGCTCTTACCCACT
GAGCCATCTCACCAGCCCTAGGCTTCCTTTTTCAATGTATCCTTTGTTAC
AAAGAAAACACTTTTAGCCAGGTGTGGCAGCACAGGCCTAGAACTGCGGC
ACTTGGGAGGTAGAAGCAGAAGGATCTGAAGTTTTAGGTTGGGGCTAGAG
ACATGGCTCAATAGTTAGAAGTACTGGCTGCACTTCCAGGGGACCCTGGT
TCAATTCCCAGCATCCATCTGGTGGCTCACAACTGTAACTTCAGTCCAAA
GAAATCCAACACCCTCTGTAGCCCCTGAGGATAGCAGGCATGCACATGAG
ACACAGAGGTACATTCTGACAAAACACCCATACGTGTTAAAAAGTAAAAT
TTAGAAACACAAGAACACCTCAGAGTCTGAAGACAGTTTGGGTTGTGCGA
GAGTCTGTCATGGACGAGGATGAGGTGAAGGAATAATAGGATAT
TCCCTATTTCAGCGGGTAGCCGGGCGGCCGCCTGATACTAAAAGGGAGGN
NGACCNANAGATATACCTGAAGAAGGCCAGGNCGCTGGACCTACATAGTC
AGGCCCTGTGACAACTATAAAAGTAATGATCCTGGCTCAGTGCGTAGTAT
CTCATCACTTTTCCTTTCTAAAGATATGATTGGATGTGATTAGTAATGTT
CAACTTTTCAGAAAGATGGGGAATATCCCCAAAACCTCTTTTAAGTTGAG
TTTTCTATTTAGATTTATATAACTGGTTATAGGAATAAGATTAAAAACTA
TGAAGATAGCCGGGCGTGTTGGCGCAGGCCTTTAATCCCAGCACTTGGGA
GGCAGATGCAGGCGGATTTCTGACGTTGAGGCCAGCCTGGTCTACAGAGT
GAGTTCCAGGACAGCCAGCGCTACTCTGAGAAACCCTGTCTCATAAAACC
AAATCATTACAAAACAAACAAACACCTAGGAAGATAATCTCTTTGCTGTC
TTAAAACAGAGCATGAATTACCTTAGTTTTCAATTTTTTTTTAAATGAAA
TTGACTGTTTGATTATTTATTTATTTATTTATTATATGTAAATTACTCTG
TAACATGTCTTCCTAACTCTCCAGAAATAAAGGATTCTAGATACTCGTTA
TGGTACTGGTTGTTCAGTCCATCATGGTGGTTTGTTTGGGGAATTTGAAA
TTCCTTGTACCTTTTTTGAATTTAATAGTCCCGGGTGCTTCTTTAACCTA
ACTGGAGATCAATTCTTCTATAATTCCTCTCTAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_o12.g1 MSMg01no452_o12.g1 CHROMAT_FILE:
MSMg01no452_o12.g1 PHD_FILE: MSMg01no452_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:37 2005
         (174 letters)



>mm_chr4_128836952_128837525
          Length = 574

 Score =  298 bits (154), Expect = 1e-85
 Identities = 166/170 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctggctcagtgcgtagtatctcatcacttttcctttctaaagatatgattggatgtgat 60
           |||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||
Sbjct: 370 cctggctcagtgcgtagtatctcattgcttttcctttctaaagatatgattagatgtgat 311

                                                                       
Query: 61  tagtaatgttcaacttttcagaaagatggggaatatccccaaaacctcttttaagttgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tagtaatgttcaacttttcagaaagatggggaatatccccaaaacctcttttaagttgag 251

                                                             
Query: 121 ttttctatttagatttatataactggttataggaataagattaaaaacta 170
           ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 250 ttttctatttagatttatataactggttataggaataagtttaaaaacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)