NNNGGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATGAATCAGAAAAAAAAATTGTGTTTATTTTACATTGTT
CTTTCTTAGCTATTTTGTCATAACTATAAAATTCAGACCAATACATTCAT
TCATGGATGGATTGAAATAAAATAGGCTGTGCCAATACATAAAAACATTT
CCCTATCATTTTCAGCATAATGGATGACTTTCAGCTGATATGCCACTGTA
TGAATTATCAGATGCAAAAAGGCACATTACTCAAGTTTTCTCTCAACATG
TTTTATGGTTTTATTGCTGGGAAGAGACACCATGACCAGGGCCTCTCTTG
TAAAGGAAAATATTTAATTGGGGTTGCCTTACAGTTTCAAAGGTTTAGTC
CATTATCTTCATGGTGAGAAGCATGGCAATATGCAAGCAGAAATGTTGCT
GGAGAAGGAGCTGACAGCTCTACATCTTGATCTGCAGGCAGCAAAAGGAG
ATTGAGACACACTTCTCCCCTCAATGCCACAGCTACTCCTCCTAATATTC
CCTATGAGCCAACGGGGCCATCTCTTTCAAACTACCTCATGCTAATTTAC
AAAAAAGTATGATGAATGTGCAGTAGAGATTTCAAGGCTGCGAAGCATGG
AGGAAGAAAGAAAGTGGTGGTTGGAAACAGACATTCAAGCATAGTTAGAT
AAACTGGTAATTTCTAGTGTTCTGGGTAGCTGTAGTTTATAATAA

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGT
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACT
CTGGAAATCCGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACT
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCAC
TGATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATAC
AATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTG

Query= MSMg01no453_a07.b1 MSMg01no453_a07.b1 CHROMAT_FILE:
MSMg01no453_a07.b1 PHD_FILE: MSMg01no453_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:45 2005
         (638 letters)



>mm_chr4_49936224_49937261
          Length = 1038

 Score = 1218 bits (630), Expect = 0.0
 Identities = 633/634 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgaatcagaaaaaaaaattgtgtttattttacattgttctttcttagctattt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgaatcagaaaaaaaaattgtgtttattttacattgttctttcttagctattt 264

                                                                       
Query: 65  tgtcataactataaaattcagaccaatacattcattcatggatggattgaaataaaatag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtcataactataaaattcagaccaatacattcattcatggatggattgaaataaaatag 324

                                                                       
Query: 125 gctgtgccaatacataaaaacatttccctatcattttcagcataatggatgactttcagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctgtgccaatacataaaaacatttccctatcattttcagcataatggatgactttcagc 384

                                                                       
Query: 185 tgatatgccactgtatgaattatcagatgcaaaaaggcacattactcaagttttctctca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgatatgccactgtatgaattatcagatgcaaaaaggcacattactcaagttttctctca 444

                                                                       
Query: 245 acatgttttatggttttattgctgggaagagacaccatgaccagggcctctcttgtaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acatgttttatggttttattgctgggaagagacaccatgaccagggcctctcttgtaaag 504

                                                                       
Query: 305 gaaaatatttaattggggttgccttacagtttcaaaggtttagtccattatcttcatggt 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 505 gaaaatatttaattggggttgccttacagtttcaaaggtttagtccattatcttcacggt 564

                                                                       
Query: 365 gagaagcatggcaatatgcaagcagaaatgttgctggagaaggagctgacagctctacat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagaagcatggcaatatgcaagcagaaatgttgctggagaaggagctgacagctctacat 624

                                                                       
Query: 425 cttgatctgcaggcagcaaaaggagattgagacacacttctcccctcaatgccacagcta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttgatctgcaggcagcaaaaggagattgagacacacttctcccctcaatgccacagcta 684

                                                                       
Query: 485 ctcctcctaatattccctatgagccaacggggccatctctttcaaactacctcatgctaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctcctcctaatattccctatgagccaacggggccatctctttcaaactacctcatgctaa 744

                                                                       
Query: 545 tttacaaaaaagtatgatgaatgtgcagtagagatttcaaggctgcgaagcatggaggaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttacaaaaaagtatgatgaatgtgcagtagagatttcaaggctgcgaagcatggaggaa 804

                                             
Query: 605 gaaagaaagtggtggttggaaacagacattcaag 638
           ||||||||||||||||||||||||||||||||||
Sbjct: 805 gaaagaaagtggtggttggaaacagacattcaag 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)