Query= MSMg01no453_b20.b1 MSMg01no453_b20.b1 CHROMAT_FILE:
MSMg01no453_b20.b1 PHD_FILE: MSMg01no453_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:53 2005
(666 letters)
>mm_chr4_59344580_59345645
Length = 1066
Score = 1265 bits (654), Expect = 0.0
Identities = 660/662 (99%)
Strand = Plus / Minus
Query: 5 gaattctttttaatctgttcacatattgagttatataggcaagacactatgtagttagtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 gaattctttttaatctgttcacatattgagttatataggcaagacactatgtagttagtg 807
Query: 65 accagctgggattccagatggcattgagatgggattaatttacctctgttggaggactac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 accagctgggattccagatggcattgagatgggattaatttacctctgttggaggactac 747
Query: 125 attgtgctcagttttgcattttatttacaaaggtcaagggaagattagggaagttcagtc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 attgtgctcagttttgcattttatttacaaaggtcaagggaagattagggaagttcagtc 687
Query: 185 agtccctgttctcagacaggaagattagcattggcctgtggatgggagccagggcaccag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agtccctgttctcagacaggaagattagcattggcctgtggatgggagccagggcaccag 627
Query: 245 gtctaggagctcgggtgtgcatgacctgacctacgtggccctttatcactctcagccctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gtctaggagctcgggtgtgcatgacctgacctacgtggccctttatcactctcagccctt 567
Query: 305 cagtgtaatggcccgttcagtgcaatcaaggtataaataaatctgagatattctaaaaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cagtgtaatggcccgttcagtgcaatcaaggtataaataaatctgagatattctaaaaga 507
Query: 365 acgcaaaggcaagcctggagatactgtgtgagtatctatttgttatagaacaggctgccc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acgcaaaggcaagcctggagatactgtgtgagtatctatttgttatagaacaggctgccc 447
Query: 425 tgctttcagactgcgttaatttcaagtcttttcagggacagacattgcccatacagctct 484
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 446 tgctttcagactgcgttaatttcaagtcttttcagggatagacattgcccatacagctct 387
Query: 485 gttgcttgattcctggtaagttactggaaagtattgtaatcctgttgctgtaaggggaac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gttgcttgattcctggtaagttactggaaagtattgtaatcctgttgctgtaaggggaac 327
Query: 545 agaagcctggcatcactcattgcctgaacaaatttacaagagcagatgtgatacttaagc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agaagcctggcatcactcattgcctgaacaaatttacaagagcagatgtgatacttaagc 267
Query: 605 caaataattgcgtaaggcaaaaaaagaaaagccaaatgacagcctgctctggtggcagtg 664
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 266 caaataattgcgtaaggcaaaaaaagaaaagccaaatgacagcctgccctggtggcagtg 207
Query: 665 ca 666
||
Sbjct: 206 ca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_b20.g1 MSMg01no453_b20.g1 CHROMAT_FILE:
MSMg01no453_b20.g1 PHD_FILE: MSMg01no453_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:53 2005
(568 letters)
>mm_chr4_59200909_59201877
Length = 969
Score = 1019 bits (527), Expect = 0.0
Identities = 555/569 (97%), Gaps = 10/569 (1%)
Strand = Plus / Plus
Query: 1 tgtagaccaggctggcctcgaactcagaaatctgcctgtctctgcttcccaagtgctggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tgtagaccaggctggcctcgaactcagaaatctgcctgtctctgcttcccaagtgctggg 269
Query: 61 attaaaggtgtatgtcaccactgcccggcatttttggattattttttaaaagtaacttga 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 270 attaaaggtgtatgtcaccactgcccgtcatttttggattattttttaaaagtaacttga 329
Query: 121 ataatttttgaaagtaacagtttaaacacagaacaattgtaaacaatatagatgtatcca 180
||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ataat-----aaa----cagtttaaacacagaacaattgtaaacaatatagatgtatcca 380
Query: 181 ggctgaagaaacaaatggaaacatttactactagcttctcccagttgcgacttaaagtta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctgaagaaacaaatggaaacatttactactagcttctcccagttgcgacttaaagtta 440
Query: 241 gaatactcttgtttttccaccacagggattcactgaatttgcccagcctggcctggaacc 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 gaatactcttgtttttccaccacagggattcattgaatttgcccagcctggcctggaacc 500
Query: 301 tgtgtgttcaagttcaggtaattctcctgcttcagtcccagaagtaactgggctacatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgtgttcaagttcaggtaattctcctgcttcagtcccagaagtaactgggctacatac 560
Query: 361 aggcttctcacacagcctagccttcatttccccattttcagtatcgtgcacatgcataat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggcttctcacacagcctagccttcatttccccattttcagtatcgtgcacatgcataat 620
Query: 421 taaacgttttagtaatagcaacatttaacagcttttttaaa-tggagtaacgtaatttaa 479
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 621 taaacgttttagtaatagcaacatttaacagctttttaaaaatggagtaacgtaatttaa 680
Query: 480 cccagtatgactaaaatctatcatcccagcaaataatacaagattcatgaatgagatggt 539
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 681 cccagtatgactaaaatctatcatcccagcaaataatacaagatttatgaatgagatggt 740
Query: 540 ttgtcagcggtgtactggcaacacttaac 568
|||||||||||||||||||||||||||||
Sbjct: 741 ttgtcagcggtgtactggcaacacttaac 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 969
Length adjustment: 10
Effective length of query: 558
Effective length of database: 959
Effective search space: 535122
Effective search space used: 535122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
