BAC Information

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BAC

Clone NameMSMg01-453L02
Chromosome4 (Build37)
Map Location 146,680,958 - 146,681,269
singlet/doubletsinglet
Overlap geneLOC666581
Upstream geneLOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
Downstream geneEG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453L02.T7 (MSMg01no453_l02.b1)MSMg01-453L02.TJ (MSMg01no453_l02.g1)
ACCAG540645AG540646
length744737
length of high quality
(start - end)		687 (56 - 742)653 (85 - 737)
definitionCHROMAT_FILE: MSMg01no453_l02.b1 PHD_FILE: MSMg01no453_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:39 2005CHROMAT_FILE: MSMg01no453_l02.g1 PHD_FILE: MSMg01no453_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:39 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTTGTTTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAATTTTCATGTCCTATGTTGTCCTCATTTCCTTAA
GGAAATTTCTCCTCACAAGTACCTTGCTGCAATCCTGTCTTCATGTTTTA
TTCAAACCTAAGGTGTGTGTATTAGTAAGGGTTCTCTAGAGTCACAGAAC
TTATGGATAGTCTCTAGATAGTAAAGGAATTTATTGATGACTCTACAGTC
GGCAGCCCAATTCCCAACAATGATTCAGTCGCAGCTGTGAATGGAAGTCC
AAGGATCTAGCAGTTATTCAGTCTCACGCAGCAAGCAGGTGAAGGAGTAA
GAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCAGAAGGT
GTAGCCCAGATTAAAGGTGTGTTCCACCACACCTTTAATCCCAGATGAAA
GGCGTAGCCCAGATTAAAGGTGTGTTCCTTAAACTCGGAGATTCAATCTT
CTGGAATCCATAGCCACTATGGCTCAAGATCTTCAAAACAAGATCCAGAT
AAGGATCTCCAAGCCTCCAGATAAGGGTCACTGGTGAGCCTTCCAATTCT
GGATTGTAGTTCATTCCAAATATAGTCAAGTTGACAACCAGGAATAGCCA
CTACAGTGTGACATTAATATCAAAGCATATATAGACACATTTCTCAATGA
TGTATTTACATCAAAGTATGCATATACCTCTGTGTTCAGCTAAC

CAACCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCTTTTTTTTGTTT
TGTTTTTGGTGGTTTTCTTTGTTTGTTGTTTCGAGACAGGGTTTCTCTGT
GTAGTCCTGGCTTGTCCTGGAACTCACTCAGAAGGTCAGGCTGGCCTCAA
ACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCAT
ATGCCACCATGCCAGGAAATTCATTCTTTTTAATTGCTGAGTAGTCCATC
TGATTTAGGATTGGTAAAGATCTTTTCCCAATCTGTTGCTGGTCTTTTTG
ACTTATGGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTTTTAAA
AATATTTATTTTATTTTATTTTATCTTATTACATGTGAGTACACTGTAGC
TGTCTTCAGACACTCTGGAAGAGGGCGTCAGATCTTGTTACGGATGGTTG
TGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAGAGC
AGTCAGTGCTCTTAACCACTGAGCCATCTCACCAGCCCAGCTTTGCAATT
TTATGAGGTCCCATTTGTTAATTCTTGATCTTACAGCACAAGCCATTGCT
GATCTGTGTAGGAATTTTCCCCCTGTGCCCATATCTTCGAGGCTTTTCTC
TACTTTCTCCTCTTAATTTCAGTGTCTCTGGTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_l02.b1 MSMg01no453_l02.b1 CHROMAT_FILE:
MSMg01no453_l02.b1 PHD_FILE: MSMg01no453_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:39 2005
         (687 letters)



>mm_chr4_146680958_146682044
          Length = 1087

 Score =  580 bits (300), Expect = e-169
 Identities = 309/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaattttcatgtcctatgttgtcctcatttccttaaggaaatttctcctcacaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gaattcaattttcatgtcctatgttgtcctcatttccttaaggaaatttctcctcacaag 253

                                                                       
Query: 65  taccttgctgcaatcctgtcttcatgttttattcaaacctaaggtgtgtgtattagtaag 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 252 taccttgctgcaatcctgtcttcacgttttattcaaacctaaggtgtgtgtattagtaag 193

                                                                       
Query: 125 ggttctctagagtcacagaacttatggatagtctctagatagtaaaggaatttattgatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggttctctagagtcacagaacttatggatagtctctagatagtaaaggaatttattgatg 133

                                                                       
Query: 185 actctacagtcggcagcccaattcccaacaatgattcagtcgcagctgtgaatggaagtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 actctacagtcggcagcccaattcccaacaatgattcagtcgcagctgtgaatggaagtc 73

                                                                       
Query: 245 caaggatctagcagttattcagtctcacgcagcaagcaggtgaaggagtaagagctagac 304
           ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 72  caaggatctagcagttactcagtctcacgcagcaagcaggtgaaggagcaagagctagac 13

                       
Query: 305 tcccttcttcca 316
           ||||||||||||
Sbjct: 12  tcccttcttcca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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